Phocoena phocoena (harbor porpoise): 136131072
Help
Entry
136131072 CDS
T11058
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03082
ATP-dependent chromatin remodeling
pphc04714
Thermogenesis
pphc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136131072 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
136131072 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
136131072 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136131072 (SMARCC2)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136131072 (SMARCC2)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136131072 (SMARCC2)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136131072 (SMARCC2)
PBAF complex
136131072 (SMARCC2)
GBAF(ncBAF) complex
136131072 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
136131072
NCBI-ProteinID:
XP_065743859
LinkDB
All DBs
Position
11:58773002..58792752
Genome browser
AA seq
1243 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLSFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARAEGQATEEKKEPKEPREGVGAIEEEAKEKTSEAPKKDDEKGKDGDSEKE
SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQPPPQALPPGSQPVPPAGAAGPPAVHGLALA
PASMAPASAGSGAPPGSLGPSEQIGQAGSTAVPQQQQAAGAPQPGAVPPGVPPPGPHGPS
PFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPAPSIIPFGSLADSISINLP
PPPNLHGHHHHLPFAPATLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSP
AIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPTQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaaaaagtatatacaa
gctgaaccacctaccaacaagtccctgtctagcctggttgtacagttgctacaatttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggctccctgtgccacatacttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaac
gtggaaatgttcatgaccattgagaaatccttggtgcagaataattgcctgtctcgacct
aacatttttctgtgcccagaaattgaacccaaactgctagggaaattaaaagacattatc
aagagacatcagggaacggtcactgaggataagaacaatgcctcccatgttgtgtatcct
gtcccagggaacctggaggaagaggaatgggtacggccagtcatgaagagggataagcag
gttcttctgcactggggctactatcctgacagttacgacacgtggatcccagccagtgaa
attgaagcatctgtggaagatgctccgactcctgagaaacctaggaaggttcatgcaaag
tggatcctggacacagacaccttcaatgaatggatgaatgaggaagactatgaagtaaat
gatgacaaaaaccctgtctcccgccgaaagaagatttcagccaagacactgacagatgag
gtgaacagcccagattcggatcgacgggacaagaagggggggaactataagaagaggaag
cgctccccatccccttcaccgaccccagaagctaagaagaagaatgctaagaaaggtccc
tcaacaccttacaccaagtcaaagcgtggccacagagaagaggagcaagaagacctgaca
aaggacatggatgagccctcaccggtccccaatgtggaagaggtgacattgcccaagaca
gtcaatactaagaaggactcagagtcagccccagtcaaaggaggcaccatgactgacctg
gatgaacaagaggatgaaagcatggagaccacgggcaaggatgaggatgagaacagcacg
gggaacaagggggagcagaccaagaatccggacctgcatgaggacaacgtgaccgagcag
acgcatcacatcatcatcccaagctatgctgcgtggtttgactataacagtgttcatgcc
atagagcggagggctctccctgagttcttcaacggcaagaacaagtccaagactccagaa
atctacctggcctatcgaaacttcatgatcgacacttaccggctgaacccccaagagtat
ctcacgtccactgcctgccgcaggaacctggcgggtgatgtctgtgccatcatgagagtc
catgccttcctagaacagtggggtcttattaactaccaggtggatgctgagagtcgacca
acaccaatggggcctccgcccacctcgcacttccacgtcttggctgacacaccgtctggg
ctggtgcctctgcagcccaagaccccgcagggccgccaggttgatgctgataccaaggct
gggcgaaagggcaaagagctggatgacttggtgccagagacggctaagggcaagccagag
ctgcagacctctgcttcccagcaaatgctcagcttccctgataaaggcaaggagaaaccg
acagacatgcagaactttgggctgcgcacggacatgtacacaaagaagaacgtcccctcc
aagagcaaagctgcggccagtgccactcgagagtggacagaacaggagaccctgctactc
ctggaggcactggaaatgtacaaagatgactggaacaaagtatcagagcacgtgggaagc
cgcacacaggacgaatgcatcttgcattttcttcggcttcccattgaagacccgtacctg
gaggactcagaggcctccctgggccccctggcctaccaacccatccccttcagccagtcc
ggcaaccctgtgatgagcaccgttgccttcctggcctctgtcgtcgaccctcgagtggcc
tccgctgctgcgaagtcagccctagaagagttctccaaaatgaaggaagaggtacccaca
gctttggtggaggcccacgttcggaaagtggaagaagcagccaaagtgacaggcaaagca
gacccagcctttggtctggaaagcagtggcattgcaggaaccacctctgatgagcctgag
cggattgaggagagcgggactgacgaggcgcgggcggagggccaggccacagaggagaag
aaggagcccaaggaaccacgagaaggagttggggctatagaggaagaagcaaaggagaag
accagcgaggcgcccaagaaggatgacgagaaagggaaagacggcgacagcgagaaggag
tcagagaagagtgacggggacccgatagttgatcctgagaaggagaaggagcccaaggaa
gggcaggaggaagtgctgaaggaagtggtggagtcggagggggaaaggaagacgaaggtg
gagcgtgacatcggcgagggcaacctctccaccgctgcggccgctgccctggctgccgct
gccgtgaaggccaagcacttggctgccgttgaggagaggaagatcaaatctctggtggcc
ctgctggtggagacccagatgaaaaagttggaaatcaaactccggcactttgaagagcta
gagacgatcatggaccgggagcgagaagcactggagtatcagaggcagcagctcctggcc
gacagacaagccttccacatggagcagctgaagtacgcggagatgagggcccggcagcag
cacttccagcaaatgcaccaacagcagcagccgcccccgcaagccctgcccccgggctcc
cagcctgtcccacctgcgggcgctgctgggccacccgctgtccacggcctggctctggct
ccagcctccatggcccctgcctctgcgggcagtggggcccctcccggaagcttgggcccc
tctgaacagattgggcaggcagggtcaactgcagtgccacagcagcagcaagcagctgga
gccccccagcctggggcagtcccaccaggggtacccccccctggaccccacggcccctca
ccgttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcccccc
cctgctccatccatcatcccatttggtagcctagccgactccatcagtattaacctcccc
cctcctcctaacctgcatgggcatcaccaccatctcccgttcgccccggccactctcccc
ccccctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgaccacc
accatgccatcttctttgcctcttgggccggggctcggatccgccgcagcccagagccct
gccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagaccca
ggcacccccctgcctccagaccccacggccccgagtccaggcacagtcactcctgtgccg
cccacacagtga
DBGET
integrated database retrieval system
