Phocoena phocoena (harbor porpoise): 136131160 Help Entry 136131160         CDS       T11058                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism pphc  Phocoena phocoena (harbor porpoise) Pathway pphc04151   PI3K-Akt signaling pathway pphc04510   Focal adhesion pphc04512   ECM-receptor interaction pphc04974   Protein digestion and absorption pphc05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:pphc00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     136131160 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     136131160 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     136131160 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     136131160 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     136131160 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pphc00536]     136131160 (COL2A1) Glycosaminoglycan binding proteins [BR:pphc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    136131160 (COL2A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Rad50_zn_hook Motif Other DBs NCBI-GeneID:  136131160 NCBI-ProteinID:  XP_065743967 LinkDB All DBs Position 11:64634433..64665092 Genome browser AA seq 1487 aa AA seqDB search MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG TVLCDDIICEDMKDCLSPETPFGECCPVCSTDLTTASGQPGPKGQKGEPGDIKDIVGPKG PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPMG PRGPSGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGSAGARGNDGQPGPAGPPGPVG PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGSDGIPGAKG SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPTGPQG APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGTRGQPG VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG LPGTPGTDGPKGAAGPGGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEPG DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPAG PVGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG LPGPPGPAGDQGTSGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTG ETCVYPSPASVPKKNWWNSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg tataacgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagact cccttcggagagtgctgccccgtctgctcaactgacctcaccactgccagtgggcaacca ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga cctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac cctggcccccctggccctcctggcccccctggcccccctggtcttggtggaaactttgct gctcagatggctggaggatttgatgagaaggctggtggcgcccagatgggagtaatgcag ggaccaatgggccccatgggacctcggggacctccaggccctgctggtgctcccggacct caaggatttcaaggcaaccctggtgaacctggggaacccggcgttgctggtcccatgggt ccccgtggcccttctggcccccctggaaaacctggtgacgacggtgaagctggaaaggct ggaaaacctggcgagagaggccttcctggtcctcagggtgctcgcggcttcccaggaacc ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgccaaggga gaagctggtgctccaggtgtgaagggtgagagtggttccccaggagagaacggttctccg ggcccaatgggtccccgtggcctgcctggtgagagaggacggactggccctgctggctct gcgggtgctcggggcaacgatggccaacccggccccgcagggcctccgggtcccgtgggt cctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggccccacc ggtgctcgaggtcctgaaggtgcgcaaggtcctcgtggtgaagctggtactcctgggtcc cccgggccggctggtgcctctggtaaccctggatctgatggaattcctggagctaaagga tctgctggtgcccccggcattgctggtgctcccggcttccctgggccccgtggtccaccc ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt gccggcttcaaaggcgaacaaggccccaagggagaaccgggccctactggtccccaagga gcccccggtcctgctggtgaagaaggcaagagaggggcccgtggagagcctggtggtgct gggcccgctggtccccctggagaaagaggtgctcctggcaaccgtgggttcccaggtcag gatggtctggcaggtcccaagggagcccctggagagcgagggcccagtggtcttgctggt cccaagggagccaatggtgaccctggtcgtcctggagagcctggcctccctggagcccgg ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc gctggtgaagatggtcgccctggacctccaggtcctcaggggactcgtgggcagcctggt gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa ggactgcctggtgctcctggtctgagaggtctccctggcaaagatggtgagacaggagct gcaggcccccctggccctgctggacctgccggtgaacgaggcgagcagggtgctcctggg ccatctgggttccagggacttcctggcccgcccggtcccccaggtgaaggtggaaaacca ggtgaccagggcgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa cgaggtttcccaggggaacgtggctctcccgggtcccagggcctccaggggccccgcggc ctccctggtactcctggcactgatggtcccaaaggcgcagctggcccaggtggcccccct ggggctcagggccctccaggtctgcaggggatgcccggtgagagaggagcagctggcatc gctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagcccccggg aaggacggtggacggggtctgactggccccattggcccccctggcccggctggtgccaac ggtgagaagggcgaagttggacctcctggtccttcaggaactgctggtgctcgcggtgcc ccgggtgaacgtggagagactggaccccccgggcccgctggatttgccggtcctcctggt gctgacggccagcccggtgccaaaggcgagcaaggagaggctggccagaaaggtgacgcc ggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggtgtg actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccccgga gctgcaggccgcgtcggaccgccaggttccaatggcaaccctggaccccccggcccccct ggtccttctggaaaagatggtcccaaaggtgctcgaggagacagcggcccccctggccga gctggtgaccctggcctccaaggtccttccggaccccctggcgagaagggagagcctgga gatgacggtccttctggtcccgacggtcctccaggtccccagggcctggctggtcagagg ggcatcgttggtctgccagggcagcgtggtgagcgaggattccccggcctgcccggccca tcgggtgagcctggcaagcagggagctcctggagcatctggagaccgaggtccccctggc cccgtgggtcctcctggcctgactggtcctgcgggtgaacctggacgcgagggaagccct ggtgctgacggcccccctggcagagacggtgcagctggagtcaagggtgatcgtggcgag accggtcccttgggtgcccccggagccccagggccccctggctctcctggccccgccggc ccagtcggcaagcagggagaccgaggagaagctggtgcacaaggccccatgggaccctca ggaccagctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa acgggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcagggt ctgcccggcccccctggtcccgctggagaccaagggacttctggtcctgccggcccttct ggccccagaggtcctcctggccccgtcggtccctctggcaaagatggcgctaatggaatc cccggccccattggacctcctggaccccgtggacgttcaggcgaaactggccctgctggt cctcctggaaatcctggaccccctggccctccaggtccccctggccctggcattgacatg tccgcctttgctggcctaggccagagagagaagggccccgaccccctgcagtacatgcgg gccgatgaagcagccggcaacctgagacagcacgacgccgaggtggacgccacactcaag tccctcaacaaccagatcgagagcatccgcagccccgaggggtcccgcaagaaccccgct cgcacctgccgggacctgaaactctgccaccctgagtggaagagcggagattactggatc gacccgaaccagggctgcaccctggacgccatgaaggttttctgcaacatggacactggc gagacctgcgtctaccccagcccagccagcgttcccaagaagaactggtggaacagcaag agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgcctg ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg gacgaagccgctggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag atccgggccgagggcaacagcaggttcacgtatacggttctgaaggatggctgcacgaaa cacaccggtaagtggggcaagactatgatcgagtaccggtcgcagaagacctcacgcctc cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac atagggcctgtctgcttcttgtaa

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