Phocoena phocoena (harbor porpoise): 136131611
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Entry
136131611 CDS
T11058
Symbol
UTP20
Name
(RefSeq) LOW QUALITY PROTEIN: small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pphc03009
]
136131611 (UTP20)
Ribosome biogenesis [BR:
pphc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
136131611 (UTP20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
DUF7051
MBTPS1_3rd
Motif
Other DBs
NCBI-GeneID:
136131611
NCBI-ProteinID:
XP_065744514
LinkDB
All DBs
Position
11:complement(20271048..20365250)
Genome browser
AA seq
2784 aa
AA seq
DB search
MKPKPVSHKIENTYRFLTFAERLGNVNIDIIHRIDRTASYDEEVETYFFEGLLKWRELNL
TEHFGKFYKEVIDKCQSFNQLVYHQNEIVQSLKTHLQVKNSYAYQPLLDLVVQLARDLQM
DFYPHFQDFFLTIASILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSNIYSMYSTLLAH
RKLHIRNFAAESFTFLMRKVSDKNALFNLMFLDLDEHPEKVEGVGQLLFEMCKGVRNMFH
SCTETAVKLILQKLGPVTETETQLPWTLVGETLKNMVKSTAFYVYKEHFGIFFECLQESL
LDLHTKVTKTNCGESSEQFKRLLETYLILVKHGNGSKITNPVDVCKVLSQTLQIAHLSTS
CRATLLDVISALILGENVSLPVTLIKETIEKIFESRFERCLILGFSEVMFAMKQFEQLFL
PSFLLYIENCFLTDDAAVKDEALAILAKLILNKAAPPTTGSMAIEKYPLLFSEQTVGSSI
RQKKTRSKGGKEQISVLDHLLSIIQLPPNKESTYLSCSWAALVVLPHIRPLEKEKVIPLV
TCFIESLFMTVDRGSFGKGNLFVLCQAVNTLLSLEESSELLHLVSVERVKNLVLAFPLEP
SVLLLADLYYQRLSLCGCRGPLSEEALMELFPKLRANISTGISKIRLLTIRILNHFEVRL
PELMEDDELSERQSVFAILRQAELVPATVNDYREKLLHLRKLRHDVVQTAVPDGPLQEVP
LRYLLGMLYVNFSALWDPVIELISSHAREMENKQFWKVYYEHLEKAATHAEKELQNDTRD
EERSIGDASWEQTQEGNVGTLYHEQFTLKTDLQERLDHTNFRFLLWRALAKFPERVEPRS
RELSPLFLRFINNEYYPADLQVAPTQDLRRKGRGLGAEEIEEEPVAGEDEELGEELAPQD
EPSQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQMVQKITLDC
IMTYKHPHILPYRENLQRLLEDRSFKEEIVHFSISEDNAVVKAAHRADLFPVLMRILYGR
MKNKTGSKTQGKSASGTRMSIILRFLAGSQPEEIHIFLDLLFEPVKHFKNGECHSAVIQA
VEDLDLSKVLPLGRQHGILNSLEIVLKNISHLISAYLPKILQILLCMTATVSHILDQREK
IQLRFINPLKNLRRLGIKMVTDIFLDWESYQFRTEEIDAVFHGAVWPQISRLGSESQYSP
TPLLKLISIWCRNARYFPFLAKQKPGHPECDILTNVFAILSAKNLSEATASIVMEIADDL
LSLPDFEPTETVLSLPVTGCVYTESADGMXASITIGGRLILPRVPAILQYLSKTTISAEK
VKKKKNRAQVSKELGILSKISKFMKEKEQSSLLITLLLPFLHRGSIAQDTEVDILVTVQN
LLKHCLEPTSFLKPLAKLFSVIKNKLSRQLLCTVFQTLSDFDSGLKYITDVVKLNAFDQR
HLDDINFDVRFSAFQTITSYIKEMQTVDVNYLIPVMHNCFYNMELGDMSLSDNASMCLMN
IIKKLAALNVTEKEYREIIHRSLLEKLRKGLKSQTESIQQDYTTLLSCLIQTFPDQPEFK
DLVQLTDCHDPEMDFFENMKHIQIHRRARALKKLAKQLMEGKIVLSSKSLQNYIMPYAMA
PIFDEKMIKHENITIAATEVIGAICKHLSWSAYIYYLKHFIHVLQAGQINQKLGVSLLVI
VLEAFHFDHKTLEEQMRKLQREENTIEEIELPEHEALELEHMDDDEKEDGCKTLSDKNEE
LENPDPDDCEETAAKESECITKSISFLPWNKEELEKTIKNIQGTITGDILPRLHKCLAST
TKREEEHKLIKSKVVNDEEVVRVPLAFAMVKLMQSLPQEVMEANLPSILLKVCALLKNRA
QEIRDIARSTLAKIIEDLGVHYLQYILKELQTTLVRGYQVHVLTFTVYMLLQGLTNKLQV
GNLDSCLDIMIEIFNHELFGAIAEEKEVKQILSKVMEARRSKSYESYEILGKFVGKDQVT
KLILPLKEILQNTTSLKLARKVHETLRRIIAGLLVNQEMTAESILLLSYGLVSENLPLLT
EKEKNPAAPAPDPRLPPQSCLLLPPTPVRGGQKAVVSKKTNMHIFIESGLRLLHLSLKTS
KIKSSSEHVLEMLDPFMSLLIDCLGSMDVKVITGALQCLIWILRFPLPSTETKAEQLMKH
LFLLLKDYAKLGAARGQNFHLVVNCFKCVTILVKKVKSYQITEKQLQVLLAYAEEDIYDI
TRQATAFGLLKAILSRKLLVPEINDVMRQVSKLAVSAQDEPVRVQCRQVFLKYILDYPLG
DKLRPNLEFMLAQLNYEHETGRESALEMIAYLFDTFPQGLLHENCGMFFIPLCLMMVNDD
SAMCKKMASMAIKSLLNKISLEKKDWLFDMVTTWFGAKKSLNRQLAALICGLFVESEGVT
FERRLGTVLRVIEKEIDPENFTNIMEETEEKAADRLLFSFLTLISKLIKGCNIIQLIKPS
ETLSKIWSHVQSHLRHPHSWVWLTAAQIFGLLFASCQPEELIRKRNVKKTKKKLSEPVAI
SFLTSDLDQKMKSISLASCHQLHSKFLDQSLGEQVVKNLLFVAKVLYLLEPDSGDEQGNV
KEDMEEQEVLGDGLAREDVEEHKACADKNEERSEPATLLWLIRKLSRIAKLEAAYSPRNP
LKRTCIFKFLGAVAMDLGIDKVKPYLPVIIAPLFRELNSTYSDQDPSLKNLSQEIIELLK
KLVGLESFSLAFASVQKQATEKRALRKKRKALEFVTNPDIAAKKKLKKHKNKKEAKKRKI
EFLRPGYKAKRQKSHSLKDLAMVE
NT seq
8355 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaagccagtttcccacaagatcgagaacacttaccggtttcttacgtttgct
gaacgattgggaaatgtgaatatcgatattattcaccggattgatagaactgcaagctat
gatgaggaagttgaaacctacttttttgagggtctgctgaagtggagagaactgaacctt
acggagcactttgggaaattttacaaagaagttattgacaaatgccagtcgttcaatcag
ctagtctatcatcaaaatgagatagttcagagtttgaagactcacctgcaagtcaagaac
agttatgcctatcaaccccttttggatttagttgtacagttggcacgagatctacagatg
gacttctatccccattttcaggactttttcctgactatcgcttcaatcctggagactcag
gacacggagttgttagaatgggctttcacctcactgtcctatctgtacaagtacctgtgg
agactaatggtgaaggacatgtccaatatatacagcatgtatagtacactcctggctcat
agaaagctacatataagaaattttgctgctgaaagctttacttttttgatgagaaaggtt
tctgataaaaatgcacttttcaatttaatgtttcttgatcttgatgaacatccggaaaaa
gtagaaggagttggacagttgctctttgaaatgtgcaaaggagttagaaatatgtttcac
tcctgtacagagacggcagtgaagctaattttgcaaaagctaggaccagttactgaaaca
gaaactcaacttccatggactttagttggagaaacactcaaaaacatggtcaaatctaca
gcgttctacgtctacaaggaacattttggtatattttttgaatgtttgcaagaatcactc
ctggatctacatacaaaagtaaccaagactaactgtggggaaagttctgaacagtttaaa
aggttgttagaaacatatctgatacttgtaaaacatggaaatggatcaaagataaccaac
cctgttgacgtttgtaaagtgttgtctcaaacattacaaatagcccatctctccacatct
tgccgggcgaccctcttggatgtaatttctgctttgatcctaggtgaaaatgtttccctg
ccagtgaccctcatcaaagaaaccatagaaaaaatttttgagagcagatttgaaagatgc
ttaattttgggtttttcggaagtcatgtttgctatgaagcagtttgagcagctttttcta
cccagctttctcttgtatattgagaattgcttcctgactgatgacgctgcagtcaaagat
gaagctctggccattttggccaaactcattctgaacaaagcagcacctcccaccactggc
tccatggcgattgagaagtaccctctgcttttctcagaacagacagtgggatccagtata
aggcagaagaagaccagatccaagggaggaaaggaacagatctcagtattagatcatctt
ttatctataattcagttacccccaaataaagagagtacttacctttcatgctcttgggcg
gcccttgtcgtgttacctcatattagacccctggagaaagagaaggtgatacccctagtc
acctgcttcatagagtcactcttcatgactgttgacagagggagctttggaaaaggaaac
ctatttgttctttgtcaagctgtaaatactctgctgagtttggaagaatcttctgaactt
cttcatctggtttctgtggaacgtgtgaagaacttagtattagcgtttcctttggagccg
tctgtgttgctgttggctgatctctattatcagagattatccttatgtggctgcaggggg
ccactttcagaggaagctctaatggaattatttcccaagttacgagcaaacatttcaact
ggcatatccaagattcggcttttgacaataaggatcctaaaccactttgaggttcggctt
ccggaattaatggaggatgacgagctctcagagcgtcagtctgtctttgctatattacgc
caggcagaacttgtgccagcaactgtgaatgattacagagagaagcttcttcatttgaga
aaactaagacatgatgtggtacagactgcagtccctgatgggccattacaggaggtgcca
cttcgttatctgttaggcatgttatatgttaacttcagtgctctctgggatcctgttatt
gaactcataagttctcatgcacgtgaaatggaaaataagcaattttggaaagtctactat
gaacatctagaaaaagcagctacacatgctgagaaagagctgcaaaatgacacaagagat
gaggagaggtccattggagatgcaagttgggagcagactcaggaaggaaacgttggaact
ctttatcatgagcagttcacattgaaaactgaccttcaggaaagactggaccataccaat
tttcggtttttgctctggcgagctctggcaaaattcccagaaagggtagagccacggtcc
agggagctttccccgcttttcttgagatttatcaacaatgagtattacccagcagatctg
caagttgcaccaacccaggatctgcgaagaaaaggcagagggctgggggcagaggaaata
gaagaggaacctgttgccggagaggatgaagagttgggggaagagctggcgccccaagat
gaaccctcacaaaagaaaaagacaagaagagctgcggccaagcagttaattgctcatttg
caagttttctctaagttttcgaatccacgagccttatatctggaatccaaattatatgag
ctgtatcttcagttgttgctacaccaagatcaaatggtgcaaaaaataacactggattgc
ataatgacgtataaacatccacatatcctcccttacagggaaaacttacaaagattgctt
gaagacagaagctttaaggaagagatagtgcattttagcatttctgaagataacgcagta
gtgaaagcagcccaccgagcagatctgtttcctgttctgatgagaattttgtatggccga
atgaagaataaaactgggagtaaaactcaggggaaatctgcttctggcacccgcatgtcc
atcattctgaggttcctcgctgggagccagcctgaagagatccacatattcttagacctg
ctgtttgagcctgtgaagcacttcaagaatggagaatgccattctgctgtcattcaagca
gtagaagatttggatttgtctaaagttcttcctttgggtcgtcagcacggtatcttaaat
agccttgagatagtattaaagaacattagtcatctgatcagtgcatacttaccaaagatt
ttgcagatactgctctgcatgaccgcaactgtatcccacatccttgatcaacgagaaaag
atacagctgaggtttattaacccactgaaaaatttaagacgtcttggaatcaaaatggta
actgatatctttttggactgggagtcctatcagttcagaacagaagaaattgatgctgta
tttcatggtgcagtttggccccagatcagcaggcttggatctgagagtcagtattctcct
actcctctgctgaagctaattagtatctggtgcagaaatgcaagatatttccctttcctg
gctaaacagaaacctgggcacccggaatgtgatatcctgaccaatgtttttgcgattctc
tcagcaaagaacctctctgaagccacagctagtattgtgatggaaatagccgatgacctt
cttagccttccagattttgaacccacagaaacagttttgagcttaccggtgacaggatgt
gtatacacagaaagtgcagatggtatgtaagcttctatcacgataggaggacgattaatt
ctacctcgtgtacctgcaattctccagtatctcagcaaaaccacaataagtgcagaaaag
gtgaaaaagaagaagaatagagcacaagtcagtaaggaactgggcattctttcaaagatc
agcaagtttatgaaagaaaaagaacaaagttctctgctcattacactgctcctgcctttc
ctccaccgtggcagtattgctcaggatacagaggttgatattctggtgacagtacaaaac
ctgttgaaacattgtctggagcctacgagcttcctcaagcctctagcaaaactcttctca
gttattaagaacaagttgtcaagacagttgctttgtacagttttccagactctttctgat
tttgatagtggattaaaatacattactgatgttgtcaagcttaacgcctttgatcaaaga
catcttgatgatatcaactttgatgttcgcttctcagcgttccagaccatcacctcttat
attaaagagatgcaaaccgtggacgttaactacctaattcctgttatgcataattgtttc
tataacatggagttaggagacatgtctttaagtgataatgcaagcatgtgcttgatgaat
atcatcaaaaagcttgctgctttgaatgtcacagagaaagaatatagagaaatcattcat
cgttcactcctggagaaactgaggaaaggattgaagagccagacagagagtattcaacaa
gattataccacgctgctttcctgtttaattcaaacctttccagatcaaccagaatttaaa
gacttggtacagctaactgattgccatgatccagaaatggacttctttgagaatatgaag
cacattcagatccacagaagagcaagagccttgaagaaattggcaaaacaactaatggaa
ggcaaaattgtgctgtcttctaaatctcttcagaattacatcatgccttatgccatggct
ccaatttttgatgagaaaatgatcaagcatgaaaatataaccattgctgccacagaggtt
attggagctatttgcaaacatctctcttggtcggcatatatatattacttgaaacatttc
attcatgtcttacaggcgggacagatcaatcaaaagttgggtgtcagtttgctagtgata
gtgttagaagcattccactttgaccacaaaactctggaagaacaaatgagaaaacttcag
agggaagagaataccatagaagagattgagttgccagagcatgaagccctggaattagag
catatggatgatgatgagaaggaagatggatgtaagactttgtcagacaagaatgaagag
ctagaaaaccctgacccagatgattgtgaagagacagcagctaaagaatccgagtgtatc
acgaagtccatctctttccttccttggaataaggaagaattggagaaaacaattaaaaat
atccaaggaaccataactggggacatcctacccaggctccataaatgtctggcatctacg
actaaaagagaagaagaacacaaactcataaaatcaaaggttgtgaatgatgaggaagta
gttcgagttcctttagcttttgccatggttaaactaatgcagtcccttccacaggaagtt
atggaagctaatctgccaagtattttgctgaaagtgtgtgccctcctcaagaacagagca
caggaaatcagagacattgctcgcagcactctcgcaaaaataatagaggatctgggtgtg
cattacctacaatatattttaaaagaattacagactacccttgtgcgtggctatcaggtc
catgtgctaactttcactgtttacatgttgctgcaaggcctcaccaacaagctgcaagtt
gggaatttggactcttgtttggatataatgattgagatttttaaccatgagttgtttggt
gccattgctgaagaaaaggaagtaaagcagatcctctccaaggtcatggaggcacgaaga
agcaagagttatgagtcttatgaaatcttgggcaagtttgtaggaaaagatcaagttaca
aaacttatccttccactaaaagagatcttgcaaaataccacgagtttaaaactggcccgg
aaagttcatgaaaccttacgtcgaatcatagcaggattacttgtaaaccaggaaatgacg
gcagaatccattctgttgcttagttacggtttggtcagcgaaaatctacccctgttaaca
gagaaggaaaaaaatccagcagcccctgcaccagatccacgtctgccaccccagagttgt
cttctgctccccccaactccagttcgaggcgggcagaaagctgttgtgagcaagaaaacc
aacatgcacatatttattgagtctggacttcggctgttgcatcttagtctgaagacttcg
aagatcaagtcttcaagtgaacatgttctggaaatgttggatccttttatgtctctcctc
atagactgcctgggttccatggacgtgaaggtgatcacaggcgctttacaatgcctgatc
tggatcttgaggttccccctgccttccacagaaacaaaagcggaacagctaatgaaacac
cttttccttctgctgaaggactatgcaaaactcggggctgccaggggccagaatttccac
ctggtggtaaattgtttcaagtgtgtgaccatacttgtgaagaaagtgaagtcttaccag
ataactgaaaagcagcttcaagttctactagcatatgctgaggaggacatttatgatatt
acaagacaagccaccgcgtttggtcttctgaaggccattttatcaagaaagttgttggtc
ccagaaatcaatgatgtcatgcgccaagtgtccaagctggcggtttctgcgcaagacgaa
cctgtcagagtccagtgcagacaggtttttctgaaatatattcttgactatcccctgggg
gacaaattgcgaccaaacttggaattcatgctcgctcaactgaattatgaacacgagacc
gggagagagtccgccttggaaatgatcgcttatctctttgacacattccctcagggactg
ctccacgagaactgcggaatgttctttattcctctttgtctaatgatggtgaacgatgac
tctgccatgtgtaaaaagatggcatccatggcaatcaaatccttactcaataaaatcagc
cttgagaaaaaagattggctcttcgatatggttaccacctggtttggggcaaagaagagc
ttaaatagacagctagctgccctgatctgtggcttgtttgtggaaagtgaaggagtcact
tttgagagaagacttggaactgttctccgtgtaattgaaaaggaaattgatcctgaaaac
tttacaaatatcatggaagagactgaagaaaaagctgcagatcgccttctgtttagtttt
cttacactgataagtaaactcatcaagggatgtaatattattcagcttatcaagccctct
gagactctgagtaaaatctggagtcacgtgcagtcccatctgagacatccgcacagctgg
gtgtggctcaccgcagcccagatttttggattgctctttgcctcttgccaaccggaggaa
cttatcagaaaacggaatgtcaaaaaaactaaaaagaaactctcggaacctgtagcaatc
agcttcctaacaagtgacctagaccaaaagatgaaaagtatctccctagcctcttgccat
cagttgcactccaaattcttggatcagtctctaggagagcaggttgttaagaatttgttg
ttcgtagccaaagtcttatatttactggaacctgattctggggatgagcaaggtaacgta
aaagaagacatggaagaacaggaagttttaggtgatggcctggccagagaggatgtggaa
gaacacaaggcgtgtgcagacaagaatgaagagcggagcgagccagccacgctgctgtgg
ttgatacggaagttgtcccggatcgcaaaactggaagctgcttattcacctagaaacccg
ttaaagagaacatgcatctttaagtttcttggagctgtagcaatggatcttggaatagac
aaggtgaagccgtacctcccagtgatcatagctcctttgttccgagaactgaacagcacc
tattcggaccaggatccttcgctgaagaatctatcccaggaaatcatagaattactgaaa
aagctggttgggcttgagagcttctccttagcgtttgcctctgtacagaaacaggctact
gagaaaagggcactccggaaaaagaggaaggctttggagtttgtaactaatcctgatatc
gctgccaagaaaaagctgaagaaacacaaaaataaaaaggaagcaaagaagagaaagatc
gagttcctgcgtccaggctataaggccaagagacaaaagagccacagcctgaaagattta
gcaatggtggagtaa
DBGET
integrated database retrieval system
