Phocoena phocoena (harbor porpoise): 136131807
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Entry
136131807 CDS
T11058
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
pphc05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136131807 (HBS1L)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
136131807 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136131807 (HBS1L)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136131807 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
136131807
NCBI-ProteinID:
XP_065744670
LinkDB
All DBs
Position
12:28128993..28211296
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AA seq
686 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDKPSVVEPVEEYDYE
DLKESSNSLLNHQLSGIDQARLFSCLDHMREVLGDAVPDDVLIEAVLKNKFDVQKALSVV
LEQDKMQNLKVKSEGAISTGKIAKGKSIDSQSSRSESEIVPKVAKMTVSGKKQTMGFEVP
GVTAEENGHIFHTPQKGHSSEDTGLVSSDVLETASKSALPSHTIQASEEQSSTPTPVKKS
SKLRQQIDIKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQE
SKKAGKSSFAYAWVLDETGEERERGVTMDVGMTKFETKTKVIILMDAPGHKDFIPNMITG
AAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERF
QEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFK
PPRRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHD
EPVDWAAAGDHVSLTLVGMDVIKINVGCIFCGPKEPIKVCTRFRARILIFNIEIPITKGF
PVLLHYQTISEPAVVKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKD
FKELGRFMLRYSGSTIAAGVVTEIKG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggccaggcatcggaatgtccgaggctataactacgatgaagattttgaagacgatgat
ctctatggccagtctgtagaggatgattattgtatttcaccatcaacagctgctcagttt
atttattcacgacgtgacaaaccttcagttgttgaacctgtagaagaatatgattatgaa
gatttgaaagaatcctccaattctcttttgaaccatcagctaagcggaattgatcaagct
cgtcttttttcatgccttgatcacatgagagaggtacttggagatgctgtgccagatgac
gtattgattgaagcagttctgaagaacaagtttgacgtgcaaaaggctttgtcagtggtt
ctggagcaagataaaatgcagaatttgaaggtcaagagtgagggagcaatatctacagga
aagatagcaaaaggaaaatcaatagattcccagtcatctcgaagtgaatctgaaattgtg
ccaaaagttgctaaaatgactgtatctggaaagaagcaaactatgggatttgaagtgcct
ggagtaactgctgaagaaaatggtcatattttccacacacctcaaaaaggacattctagt
gaagataccggccttgtttcttctgatgtacttgagaccgcttctaaatcagcccttcca
tcccacaccattcaagcatcagaagagcagagttcaacaccgacaccagtgaaaaagtct
agcaagctgaggcaacaaatagatatcaaagcagagctggaaaagcggcaaggagggaag
caactcctcaacctagtggtcattggtcatgttgatgctgggaaaagtactctgatgggc
catttgctttatcttctgggtaatgtaaacaaaagaactatgcataagtatgaacaagag
tctaaaaaggctggcaaatcttcgtttgcatatgcatgggtcttggatgagactggcgaa
gaaagggaaaggggagtaacaatggatgttggtatgacaaagtttgagaccaaaaccaaa
gttattatattaatggatgctccaggccataaggatttcattccaaatatgattacagga
gcagcccaggcagatgtagcagttttagttgtagatgccagcaggggagagtttgaagct
ggatttgagactgggggacaaacacgagaacatggcctcttggttcgttctctgggagtg
acccagctcgcagttgcagtcaataaaatggatcaggttaattggcaacaagaaaggttt
caagagattactggaaaacttgggcactttcttaagcaagcaggttttaaggaaagtgat
gtagcttttatccctacaagtggtctcagtggtgaaaatctaatcacaagatctcagtca
agtgaacttacaaaatggtataaaggactatgtttattagaacaaattgattccttcaag
cctcctcgaagatctgttgacaagcctttcagattatgtgtatctgatgttttcaaagac
caaggatctggattttgtgtaactggtaaaattgaagctggttatatccaaactggtgac
cgactactagcaatgcctcctaatgaaacttgtactgcaaaaggaatcactctgcatgat
gaacctgtcgactgggcggcagcaggcgatcatgttagtcttacgttggttgggatggat
gtcatcaaaatcaatgttggctgcatattttgtggccccaaagaacccattaaggtttgc
actcgtttcagagcccgaatcctcatctttaatattgaaattcctatcactaaaggattt
cctgtgctgttacactaccaaaccatcagtgaacctgccgttgttaaacgattgattagc
gtcttaaacaaaagcactggtgaagtcacaaagaaaaagcctaaattgttgaccaaaggc
cagaatgcattggtggagctacagacacaaagaccagtggctcttgagctgtacaaagac
tttaaagagctggggagattcatgctgcgctacagtggttctaccatagctgctggtgta
gtcaccgagataaaaggttga
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