Phocoena phocoena (harbor porpoise): 136131815
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Entry
136131815 CDS
T11058
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136131815 (SCAF8)
03041 Spliceosome [BR:
pphc03041
]
136131815 (SCAF8)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136131815 (SCAF8)
Spliceosome [BR:
pphc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
136131815 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
136131815
NCBI-ProteinID:
XP_065744683
LinkDB
All DBs
Position
12:complement(12084925..12175215)
Genome browser
AA seq
1508 aa
AA seq
DB search
MDEHHKHYINEKLKVVTIKGQVQYQYSIIGGSTTPSTRVGQNVRSGLAQCKETLLLDFPT
WGLPGFDFCPFYPRRLSKPKVQSNALQWPQGRSKRQQHSLPQRRGGGVRVRGRDPGSRDE
RGLLAATLWPARARWFRAAARACAVPSPGGALAGAADLRAARPDSCPPYWIPQPLLPALP
PPSSPCAAGSYGPSGGECSGRRLFRRRAPSLRTDNMEAVKTFNSEVGLCLSTPACTDCFS
SSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPG
LYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNV
FKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQI
TNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTA
AAAAASTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIFHQ
IAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSVSPSQGSSQQHFLEPEANL
DDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGS
RKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVG
QVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSK
VIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWESV
KSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFPVS
MPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPLSM
TPETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLIDHQISSGE
NTRSVIPNDVSGGSAILGGQPPNVTNNSGILGVQRPNVSSNNEILGVRPSNVSNSSGIIG
AQPPNILNNSGILGIQPPSVSSSSGLLGMLPPNIPNNSGLMGVQPPSVPNTSGLLGTQPP
AGPQNLPPLNLSNQRMPAMPMLDIRPGLIPQTPGPRFPLMQPGIPPQRGLPPPAVLDSAL
HPPPRGPFAPGDIFSPPERPFLVPGRQSVDNVANPEKRIPLGNDNIQQEGDRDYRFPPIE
TRETISRPPPVDVRDVVGRPVDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLGRR
DHFGFTPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQ
EVHRDFDDRRRPWERQRDRDDRDFDFCREINGSRFGRDRIQNTWVPPPHARVFDFFEGAT
SQRKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLSSSSEISKEKSDTVADIESEPVV
ESTETEGT
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacatcacaagcattatataaatgaaaaattgaaagttgttactataaaaggc
caagtgcagtaccagtattccatcataggaggaagcacaacgccctctactagggttggc
caaaatgttcgctcaggtctagcccagtgtaaagagaccctcctgttagactttccaact
tgggggctcccaggctttgatttctgccccttttaccccagaaggctgtcaaaacccaaa
gttcaaagcaatgctttgcagtggccccaagggcgctccaagaggcagcagcactcgctc
ccgcagcggcgaggaggtggggtgcgggtgaggggcagggaccccgggagccgagatgag
cggggcctcctggcggcgacgctctggcccgcgcgcgctcgatggttccgcgcggcggcc
cgggcctgcgcggtcccgtcgccagggggcgcgctggcaggagccgcggatctccgagct
gcgcggcccgactcgtgtccgccatattggattccgcagccgctgctgccagcgcttcct
cctccgtcttcgccgtgcgctgctggttcctacggcccgagcggcggggagtgcagtggc
cgccgcctcttccgccgccgggctccgagcctccgcaccgacaacatggaggctgtgaaa
accttcaatagcgaggttggattgtgcctctctactcctgcttgtacagactgcttttcc
agcagcatggacacaagaagcatattgtattccctgaatgactacaagccacccatttct
aaagcgaaaatgacccaaattactaaagcagccatcaaagctattaagttttataaacat
gtggtacagagtgttgagaaattcattcagaaatgtaaaccagaatacaaggtacctgga
ctttatgttattgactctattgtacgacaatctcgacatcagtttggtcaagaaaaggat
gtgttcgcacccagatttagtaataacatcattagcactttccagaatttatatcgttgc
cctggagacgacaagagtaaaatagtgagagtattaaacttgtggcagaagaataatgta
tttaaaagtgagattattcaacctcttttggatatggcagcagggattcctcctccagtt
gtcacacctgttttggccagtactactgctgctatgagcaataccccaggaactcctgtg
acacctgttactccagccaatgtggtccaaggtttacctgatccgtgggtgtctcagata
acaaatacagatacacttgcagctgtagctcagatcttacaaagtcctcaaggccaacag
cttcagcagttaatacagactttacagatacagcagcagaagcctcagccttccatcttg
caagccctggatgccggccttgtggtccagctgcaggctcttacagcacagctcacagca
gcggctgcagcagccagcacccttaatcccctagaacagggagtgtcttttaacaagaag
ttgatggataggtttgattttggggaagattctgagcatagtgaagaacccaaaaaggaa
attccagcttctcaactttctcatgtttcagaatctgtgaacaattccatctttcatcag
atagcagaacagctacagcagcaaaatcttgaacatctcagacagcaactcctggaacag
caacagcctcaaaaggcaactcctcaggatagtcaagaaggaacatttgggtcagagcat
tccgtgtcaccatcacaagggagcagtcaacagcatttccttgaacctgaagcaaatttg
gatgattccatagatattcagcagcaggatatggatatagatgaagggcaagatggagta
gaagaggagatctttgaacaggaagcaaagaaagtggctgttcgctcaagatcaagaacg
cattcacgatctcgttcaagatcaccaagaaaacgaagatctaggtcacgatctggttct
cgaaagcgtaaacacagaaagcgatcacgctctcgctctagagaaagaaaaaggaaatca
tcacgttcatactcaagtgaaagaagagctagagaaagggagaaagaacgacagaagaag
ggattgcctccaattagatctaaaacattaagtgtatgtagtactactctgtgggttggt
caggtagacaagaaggcaacacagcaagatttaaccaacctgtttgaagagtttggacag
attgaatccattaatatgattcctcccaggggctgtgcttatgtctgcatggttcatcga
caagatgcatttcgggctcttcagaaacttagttccgggtcatataaaattgggtccaag
gtcattaagattgcttgggctttaaacaaaggtgtaaaaacagaatacaaacaattctgg
gatgtggatcttggagtaacatatataccatgggaaaaagttaaagtggatgacttggaa
ggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaaagtgtg
aaaagctcagaacccgttaaagagacggtccagacaactcagagcccacctccagttgaa
aaggagacagtggtcacaacccaggcagaggttttccctccacctgttgctatgttacag
attccagtagctccagcagtgcctacagttagtttagtcccaccagcatttcctgtgtca
atgccagttcctcctcctggattcagtccaattcctccaccgccttttctccgcgcaagt
tttaacccttcacaaccacctcctggtttcatgccacctccagttccaccacctgttgta
ccaccacctactattccaccagtagtaccaacatctttagtgcagccgccattatctatg
actccagaaactgtgaaagatgttggatttggtagccttgttttgccaggtggttctgtt
gccagcagtcttgctacttccactctgccagctggaagtgtttttaatcctccaactaaa
caagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttcttctggtgaa
aacaccagatcagtgattccaaatgatgtttcaggtggctctgcgattttaggaggacag
ccgccaaatgtgacgaacaattctggaattctgggagtccaaagaccaaatgtatcaagt
aataatgaaattcttggagtccggccatctaatgtttccaatagttctgggattattgga
gcccagccaccaaatattctaaataactctggaattttgggaatacagccaccaagtgtg
tcaagtagttctggacttctgggcatgctacccccaaatatacctaacaattccggactt
atgggagtacagccacccagtgttccaaatacttctggacttttgggaacacagccacca
gctgggcctcaaaatttaccccctttaaatctttctaatcaaaggatgcctgcaatgcca
atgttagacattcgtccaggactaataccacagacacctggaccaagattccctttaatg
cagcctggaattccacctcagcggggactccctcccccagcggtgcttgattcagctctt
catccaccaccccgtggtccttttgctccaggagatatttttagtccacctgaaagacct
tttctagttcctggaagacaaagtgtagacaatgttgctaatccagaaaaaaggatacca
cttgggaatgataacattcaacaggaaggagatagagattaccggtttcctcccatagaa
accagggaaaccattagtagacctcccccggtggatgttagggatgtggttggacggcct
gtagatccaagagaaggtcctggaaggcctccattagacggtagagatcattttggacga
cctcctgtagatattagagagaatcttgtgaggccaggcatagatcatcttggtcgaaga
gaccactttggctttactccagagaagccctgggggcatagagattttgacgagagagag
catcgggttctgcctgtctatggtggtccaaaaggcttacatgaagaaagaggtagattt
cggtctggaaactatcggtttgatcctagaagtggtccttggaacagaggatttggacaa
gaagttcacagagattttgatgaccgcagaagaccctgggagaggcaaagggatagggat
gacagagattttgatttctgcagagaaattaatggaagtcgttttggacgagatagaatt
caaaacacctgggtcccccctcctcatgctcgggtttttgatttttttgaaggggccact
tctcaacggaaaggtgataatgtgcctcaggttaatggtgaaaataccgagagacatgct
cagccaccacctctaccagcgcagagtgatcctgaactttatgaaaaactgtcatcttca
agtgaaataagcaaggagaagagtgacacagttgctgatatagagagtgaaccagtggta
gaaagcacagaaactgaggggacataa
DBGET
integrated database retrieval system
