Phocoena phocoena (harbor porpoise): 136132061
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Entry
136132061 CDS
T11058
Symbol
RIMS1
Name
(RefSeq) regulating synaptic membrane exocytosis protein 1 isoform X1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04721
Synaptic vesicle cycle
pphc04723
Retrograde endocannabinoid signaling
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09156 Nervous system
04723 Retrograde endocannabinoid signaling
136132061 (RIMS1)
04721 Synaptic vesicle cycle
136132061 (RIMS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136132061 (RIMS1)
Membrane trafficking [BR:
pphc04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
136132061 (RIMS1)
Small GTPases and associated proteins
Rab associated proteins
136132061 (RIMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
PDZ
FYVE_2
PDZ_6
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-GeneID:
136132061
NCBI-ProteinID:
XP_065744956
LinkDB
All DBs
Position
12:complement(81754006..82234057)
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AA seq
1678 aa
AA seq
DB search
MSSAVGPRGPRPPTVPPPMPELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MVKPAACKTPRNVEHQPHQPSPRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICH
KTKFADGCGHLCSYCSTKFCARCGGRVSLRSNNEDKVVMWVCNLCRKQQEILTKSGAWFF
GSGPQQPSQDGTLSDTATGAGSEAPREKKSRLQERSRSQTPLSTATASPQDQGPHSVPPD
KRKGAEPSQQAGRPEQKQASFRSRSEPPRDRKKTPGLAEQNGKGAPKGERKRAPRSSAQP
AEGPTEERERKERRESRRLEKGRSQDYPDVPEKRENGPAVEAEKQRKEEEYQTRYRSDPN
LARYPVKPPPEEQQMRMHARMSRARHERRHSDVALPRTEAAAGPEVRPGPRAPNAARGSP
PASPRAYSAERTAEARAPGAQPLAEPSPPAPRPGPGPADAPEPRAPEPLRKQSRLDPGAA
VLVRKAKREKVETMLRNDSLSSDQSESVRPSPPKPHRAKRGGKRRQMSVSSSEEEGVSTP
EYTSCEDVELESESVSEKGDLDYYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVI
LNKRTTMPKESGALLGLKVVGGKMTDIGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNG
KPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMER
PSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPY
VKMYFLPDRSDKSKRRTKTVKKVLEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQEE
ESEFLGEILIELETALLDDEPHWYKLQTHDESSLPLPQPSPFMPRRHVHGESASKKLQRS
QRISDSDISDYEVDDAIGVVPPVGYRSSARESKPSTLTVPEQQRTTHHRSRSVSPHRGDD
QGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDVSCSPVGHRPGDVDSQCLSEQDSELL
MLPRAKRGRSAECLHTTRHLVRHYKTLPPKMPLLENCSHWNIYSSILPAHTKTKPLHHEC
FHSRALRFTDEILVSDLQPSLDRARSASTNCLRPDASLHSPERERGRWSPSLDRRRPPSP
RIQIQHASPENDRHSRKSERSSTQKQTRKGTASDAERVLPPCLSRRGYAAPRATDQLVLR
GKHPARSRSSEHPSVRTLCSMHHLAPGGSAPPSPLLTRVHRQASPTRSPPADTAFGSPRG
RQLPQVPGRSGSAEQASLVVEERTRQMKMKVHRFKQTTGSGSSRELDREQYSKYNVHTDQ
YRSCDSVSARSSDSDVSDVSAISRTSSTSFLSEQSERPRGRTSSFTPKMQGRRMGTSGRA
ITKSTSVSGQMYTLEHNDGSQSDTAVGTVGTGGKKRRSSLSAKVVAIVTRRSRSTSQLSQ
TESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRLGADS
QFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPA
PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKC
FMGVAQILLEELDLSSMVIGWYKLFPPSSLVEPTLTPLTRRASQSSLESSTGPPCIRS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggccgtggggccccgcggtccccgcccgcccaccgtgcctcccccgatgccc
gagctgcccgacctgagccacctgaccgaggaggagaggaacatcatcatggcagtgatg
gaccggcagaaagaagaggaggagaaggaagaagccatgctcaagtgtgtggtcagggac
atggtgaagcctgctgcctgcaaaaccccaagaaatgttgaacaccagccccaccagcct
tcaccgagattgcatcaacaatttgaaagctataaggagcaagtgagaaaaataggggaa
gaagcacggcgttaccagggtgagcacaaagacgatgctccgacctgcgggatctgccac
aagaccaagttcgccgatggctgcggccacctgtgctcctactgcagcaccaagttctgc
gcgcgctgcgggggccgcgtgtccctgcggtccaacaacgaggacaaagtggtgatgtgg
gtatgcaatttgtgtcgaaagcaacaagaaatcttaaccaaatcgggggcatggttcttc
ggaagcggccctcagcagccaagtcaggatggaaccctcagcgatacagctacaggcgct
ggttctgaggccccgagagaaaagaaatcccggctgcaggagcgatctaggtctcagacc
cccctgagcacagccactgcctctccccaggaccagggtccccacagcgtgccgcccgac
aagagaaagggggctgagccctcgcagcaagccgggaggcctgagcagaagcaggcttct
ttcaggtctagaagtgagcctcccagagacaggaagaagaccccagggctcgccgagcag
aatggcaaaggcgccccgaagggcgagcggaaacgcgcgcccaggtcctctgcgcagccc
gcggaggggcccacggaagaacgggagcgcaaggaaaggcgggaaagccgaaggctcgag
aaaggccggtcccaggactaccccgacgtgccagagaaacgcgagaacggcccggcggtg
gaggccgagaagcagaggaaggaggaggagtaccagacccggtaccgcagcgacccgaac
ctggcgcggtacccggtcaagccgccgcccgaggagcagcagatgcgcatgcacgcgcgg
atgtcccgcgccaggcacgagcggcgccacagcgacgtggccctgccgcgcaccgaggcc
gcagctgggcccgaggtcaggcccggcccccgcgcgcccaacgccgcccggggctcgcct
cccgcctcgccgcgcgcctactcggccgagaggaccgcggaggcccgggcgccgggcgcc
cagccgctcgccgagcccagcccgccggcgccccggcccggcccgggccccgccgacgcc
ccggagcccagggccccggagccgctccggaagcagagccgcctggaccccggcgcggcc
gtcctcgtgcgcaaggccaagcgcgagaaggtggagaccatgctgcgcaacgactcgctc
agctccgaccagtccgagtccgtgcggccgtctccgcccaagccgcatcgcgccaagagg
ggcggcaagcggcgccagatgtcggtgagcagctcggaggaggagggcgtgtccacgccg
gagtacacgagctgcgaggacgtggagctagagagcgagagcgtcagcgagaagggtgac
ttggattattactggctggatcccgccacgtggcatagccgggaaacatcacctattagc
tcacatcctgtaacgtggcagccatctaaagagggggaccgattaattggacgcgttatt
cttaacaagagaacaaccatgcccaaagaatcaggtgcattactgggtctgaaagttgtt
ggagggaaaatgactgacataggacgcctcggtgctttcatcaccaaagtaaagaagggt
agcctcgcagatgtagttggacacttgagagcaggggatgaagttctagaatggaatggt
aaacccctgccgggagctacaaatgaagaagtttacaacattattttagaatcaaaatca
gaacctcaagttgaaattattgtttcaaggcctattggtgacattccacggattcctgag
agctcccaccctccactggagtccagttctagttcctttgaatctcagaagatggaaagg
ccttccatttctgtaatttctccaacaagccctggagctctcaaggatgcgccacaagtc
ttaccaggacaactttctgtgaagctgtggtatgacaaagtgggccaccagctgattgta
aatgttctgcaagcaacagatctacccccaagagtagatgggcgtcccaggaatccctat
gtaaaaatgtattttcttccagatagaagtgataaaagtaaaaggcgaaccaaaacagta
aagaaagtactagaaccaaaatggaaccagacttttgtgtactcacacgtgcatcgtaga
gatttcagagaacggatgttggaaataaccgtgtgggaccagcccagggtgcaagaagag
gagagtgaattccttggagagatcctcatagagttggagacggcgcttctagatgatgag
ccgcattggtataaacttcagactcacgatgaatcctcactacctctgcctcagccatca
cccttcatgccacggcgacacgtccacggggagagcgccagcaaaaagctgcaaaggtcc
cagcgaatcagtgacagtgacatatcagactatgaggttgatgatgccattggagtggtc
cctccagtaggttataggtctagtgctagagaaagcaaaccttcaacattaactgtacca
gagcagcagagaacaacgcatcaccgatcacggtcggtatctcctcatcgtggcgatgat
caggggaggccgcgttcccgtttaccaaatgtgccattacagaggagtttagatgaaatt
catccaacaagaaggtcacgttctccaaccagacaccatgatgtgtcctgcagcccagtt
ggtcacagacccggagatgtggacagtcagtgtctatcagaacaagacagtgagcttctc
atgcttcccagagcaaaacgaggacgaagtgcagaatgcctacacaccaccagacatctt
gttaggcactataaaacattaccgcccaagatgcccttgttagagaactgttctcactgg
aatatttacagctcaattctgcctgcacatactaaaaccaaaccccttcaccatgaatgc
tttcactcgagagcactgaggtttactgatgagattctggttagtgacctgcagccctcc
cttgacagggcgaggagtgctagtaccaactgcttgagaccagatgctagtttgcattca
ccagaacgagaaaggggtagatggtccccctctctagataggagacggcctcctagcccc
aggattcaaatccagcatgcgtctccggagaatgacaggcactccagaaagtctgaaaga
tctagcacccaaaaacagactaggaaaggcactgcctctgatgcagaaagggttcttcca
ccatgtctttctagaaggggatacgcagccccgagagcgactgatcagctagtgcttagg
ggaaaacatcctgctcgctcccgctcgagtgagcaccctagtgtcagaacactgtgttct
atgcaccaccttgcccccggagggtcggcaccaccttctccgctcctgacaagagtgcac
cggcaggccagcccgacgcggtccccgcccgcagacacagcctttggcagccctcggggc
aggcagctcccacaagtgccagggaggagcggcagtgcagaacaagcaagcttagtagtg
gaggagcgaacgagacagatgaaaatgaaagtgcatcgatttaagcagacaacagggtct
ggttctagtcgagaacttgatcgcgaacaatactccaagtataacgtacatacagatcag
taccgaagctgcgacagcgtctccgccagatcctcagacagtgacgtcagcgacgtgtct
gccatctccaggaccagtagcaccagcttcctgtccgagcaatctgagcggcccaggggc
aggaccagttcatttacccctaaaatgcaaggcagacggatggggacttcaggaagagcc
atcaccaagagcacgagcgtgagtggacagatgtacacactggagcataatgatggcagt
cagtcggacacggctgtgggcactgttggaacaggtgggaagaaaaggaggtccagcctg
agtgccaaagtggttgccatcgtgactcgaaggagcagaagcacgtcccagctaagccaa
acagagtcaggccacaagaagttaaaaagcaccatccagagaagcacagagacgggcatg
gcagccgagatgagaaagatggtgaggcagccaagccgggagtctacggacggcagcatc
aacagttacagctccgagggaaacttaatatttcctggagtgagactaggagcggatagt
caattcagtgattttctcgatggactgggacccgcccagcttgttggccgccaaaccctc
gccacccctgcaatgggtgatatacaaattggaatggaggataaaaaaggccaattagaa
gttgaagtgattagagcacgaagcctcacgcaaaagcctggttccaaatccacacctgct
ccatacgtcaaagtgtatcttttggagaacggggcctgcatagccaaaaagaagacaaga
attgcacgaaagacccttgaccccttgtatcaacagtccctggtttttgacgaaagtcca
cagggtaaagtccttcaggtgattgtctggggagactacggcaggatggatcacaaatgc
tttatgggcgtggcccagatcttgttggaggaactggatctttccagcatggtcatcggc
tggtacaagctgttccccccgtcatcactggttgaacccacgctcacccccctgacccgc
cgggcttcccaatcatctctggaaagttccaccggccccccctgcatccggtcctaa
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integrated database retrieval system
