Phocoena phocoena (harbor porpoise): 136132473
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Entry
136132473 CDS
T11058
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03082
ATP-dependent chromatin remodeling
pphc03250
Viral life cycle - HIV-1
pphc04714
Thermogenesis
pphc05225
Hepatocellular carcinoma
Brite
Protein phosphatases and associated proteins [BR:
pphc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
136132473 (SMARCB1)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136132473 (SMARCB1)
SWI/SNF complex
136132473 (SMARCB1)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136132473 (SMARCB1)
PBAF complex
136132473 (SMARCB1)
SWI/SNF complex
136132473 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
136132473
NCBI-ProteinID:
XP_065745456
LinkDB
All DBs
Position
13:64855490..64881115
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcctgtcaagttccagctagaa
gacgacggcgagttctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacacgaccctggccaccagcgtaactctgttaaaagcctccgaggtggaagagattctg
gatggcaacgatgagaagtacaaggccgtatccatcagcacggaaccccccacctacctc
agggaacagaaggctaagaggaacagccagtgggtacccaccctgcccaacagctcccac
cacctggacgccgtgccctgctccaccaccatcaacaggaaccgcatgggccgggacaag
aagaggacgttcccgctatgctttgacgaccacgacccagctgtgatccatgagaatgcg
tcccagcctgaggtgctggttcccatccgactggacatggagatagacgggcagaagctg
cgggacgcctttacctggaacatgaacgagaagctgatgacccctgagatgttttcagaa
attctctgtgatgacctggatttgaacccactgacgtttgtaccagccatcgcctccgcc
atcagacagcagatcgagtcctaccccacagacagcatcctagaggaccagtcagaccag
cgtgtcattatcaagctgaacatccacgtgggaaacatctccctggtagaccagtttgag
tgggacatgtcagagaaggagaactcgccggagaagtttgccctgaagctgtgctccgag
ctggggctgggcggggagttcgtcaccaccatcgcgtacagcatccggggacagctgagc
tggcatcagaagacctacgccttcagtgagaaccccctgcccacggtggagattgccatc
cggaacacaggcgacgctgatcagtggtgcccgctgctggagaccctaacagacgccgag
atggagaagaagatccgcgaccaggacaggaacacaaggcggatgaggcgtctggccaac
actgccccggcctggtaa
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