Phocoena phocoena (harbor porpoise): 136132741
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Entry
136132741 CDS
T11058
Symbol
TOP3B
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03440
Homologous recombination
pphc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136132741 (TOP3B)
03460 Fanconi anemia pathway
136132741 (TOP3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphc03032
]
136132741 (TOP3B)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136132741 (TOP3B)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
136132741 (TOP3B)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Topoisomerases
136132741 (TOP3B)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
136132741 (TOP3B)
FA (Fanconi anemia) pathway
136132741 (TOP3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
136132741
NCBI-ProteinID:
XP_065745759
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Position
13:complement(64712511..64726184)
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AA seq
861 aa
AA seq
DB search
MKTVLMVAEKPSLAQSIARILSRGSMSSRKGLNGTCSVHEYTGTFTGQLVRFKMTSVCGH
VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDK
EGENICFEVLDAVLPVMNQAHSGEKTVFRARFSSITDTDICTAMVRLGEPDHNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVLQAKVDADKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLA
LNTVEMLRVASSSLGMGPQHTMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQANH
PYWADTVKRLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGEAWRLYEYITRHFIATV
SHDCKYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQRGDTFAVAE
VKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVVVESGRRLKPTNL
GIVLVHGYYKIDVELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSI
AGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKL
YKELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGTGCNECTHPTCQHSLSM
LGIGQCVECESGVLVLDPTSGPKWRVACNRCNVVAHCFENAHRVRVSADTCGTCEAALLD
VDFNKARSPLLGDGTQHTGCVFCDPVFQELVELKHAASCHPMHRGPGRRQGRGRGRGRRP
AGKPGTRRPKDKMSALAAYFV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggtgctcatggtggctgagaagccgtccttggcccagtccatcgccagaatc
ctctctcgagggagcatgtcctcacgcaaagggctgaacgggacatgctcagtgcacgag
tacaccgggaccttcactggccagctggtccgcttcaagatgacgtccgtctgtggtcat
gtgatgaccctggacttcctgggaaagtacaacaagtgggacaaggtggaccccgccgag
ctgttcagccaggccccaacggagaagaaggaggccaaccccaagctgaacatggtgaag
ttcctgcaggtggagggcaaaggctgtgactacatcgtactgtggctggactgcgacaag
gagggagagaacatctgcttcgaggtcctggatgcggtgctgcctgtcatgaatcaggcc
cacagtggcgagaagacagtgttccgggcccggttcagctccatcacagacacagacatc
tgcactgccatggtccgcctgggtgagcccgaccacaacgaggcactctcagtggatgcg
cggcaggagctggacctgcgcatcggctgcgccttcaccaggtttcagactaaatacttc
caggggaaatacggcaacctagacagctcgctcatctccttcgggccatgccagaccccc
acgctgggcttctgcgtggagagacatgataaaatccagtccttcaaaccggagacctac
tgggtgctgcaggccaaggtggatgccgataaggaccgatccctccttttggactgggac
cgagtgcgtgtgttcgaccgggagatcgcacagatgttcctgaacatgaccaagctggag
aaggaggcccaggtggaggccacaagcaggaaggagaaggccaagcagaggccactggcc
ctgaacaccgtggagatgctgcgtgtggccagctcttccctggggatgggcccacagcac
accatgcagaccgcagagcggctctacacgcagggctacatcagctacccgcgcaccgag
accacccactaccccgagagcttcgacctgaaggggcctctgcggcaacaggccaaccac
ccctactgggctgacacggtgaagcggctgttagcggaaggtatcaaccgcccacggaaa
ggccacgacgctggcgaccatccccccattacccccatgaagtctgccacggaggctgaa
ttaggcggcgaggcctggcggctgtacgagtacatcaccaggcacttcatcgccacagtc
agccatgactgcaagtacctgcagagcaccatctccttccggatcgggcctgagcacttc
acctgcacaggcaagaccgtcatctccccaggtttcacggagatcatgccttggcagagt
gtgcccctggaggagagcctgcccacctgccagaggggcgacaccttcgccgtggctgag
gtcaagatgctggagaagcagacgagcccccctgactacctgacggaggctgagctcatc
acgctcatggagaagcacggcatcgggacggatgccagcatccccgtacacatcaacaac
atctgccagcgtaactatgtggtcgtggagagtgggcgccgactcaagcccaccaacctt
ggtattgtactggtgcacggctattacaagattgatgtggagctagtgctccccaccatt
cgcagtgcagtagagaagcagctgaacctgatcgcccagggtaaagccgactaccgccag
gtcctgggccacaccctggacgtcttcaagaggaagttccactacttcgtggactccatt
gcgggcatggatgagctgatggaggtgtccttctcgcccctggcggccaccggcaagccc
ctttcccgctgtgggaagtgccaccggttcatgaagtacatccaggccaagccaagccgc
ctgcactgctcccactgcgatgagacctacaccctcccccagaatggcaccatcaagctc
tacaaggagctccggtgcccgctggacgacttcgagctggttctgtggtcatcaggctcg
cggggcaagagctacccgctgtgcccatattgctccaaccacccacccttccgagacatg
aagaaaggcacaggctgcaacgagtgcacacaccccacctgccagcactcgctgagcatg
ctgggcattggccagtgcgtggagtgcgagagtggtgtgctggtgctcgaccccacctca
ggccccaagtggcgggtggcctgcaacaggtgcaatgtggtggcacactgcttcgagaat
gcccaccgcgtgcgtgtgtctgccgacacctgtggtacctgcgaggccgccctgctggac
gtcgacttcaacaaggccaggtccccactgctgggtgacggcacgcagcacacgggctgc
gtcttctgcgacccggtcttccaggaactggtggagctgaagcacgcagcctcctgccac
cccatgcaccgcgggcctgggaggaggcagggccggggccggggccggggccggaggcca
gcggggaagccaggcaccaggagacccaaggacaaaatgtcggccctggccgcctacttc
gtgtga
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