Phocoena phocoena (harbor porpoise): 136133605
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Entry
136133605 CDS
T11058
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
136133605 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pphc04121
]
136133605 (TRIM54)
Ubiquitin system [BR:
pphc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
136133605 (TRIM54)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
DUF8512
TRIM_CC
CoiA_N
Sina_RING
DUF349
PHP
DD_DDX21-DDX50
Motif
Other DBs
NCBI-GeneID:
136133605
NCBI-ProteinID:
XP_065746914
LinkDB
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Position
14:complement(68895211..68913648)
Genome browser
AA seq
515 aa
AA seq
DB search
MNFTVGFKPLLGDAHSMDSLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQHLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGISM
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFEALCAVLEERKGELLQALALKQE
EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGTMSKVELGG
RPEPGYESMEQFTVSVEHVAEMLRTIDFQPGASGEEEDEEVALDGEEGSAGPEEERLEGP
EGECGHWRGLPAPFTAHSLSLGFGDDRMTIHPNLLLIWDHFGGGSGMNPCWAPPRYQARI
RKPSAKRVGGGAAAPGLEFLGDLGTMGTAGPWLKAVLAEPSRSIWSPLADLGAPLSHGFT
PCCGSPRPAAEANGSSALLLKTSNAESAQGIPRPL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcacagtgggtttcaagccactgctaggggatgcacacagcatggacagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaaaccggtggtgatcctg
ccctgccagcacaacctgtgccgcaagtgtgccaatgacgtcttccaggcctcaaacccg
ctgtggcaatcccggggttccaccactgtgtcttcaggaggccgtttccgctgcccgtct
tgcaggcatgaggttgtcctggaccgacatggtgtctacggcctgcagcggaacctgcta
gtggagaacattatcgacatttacaagcaggagtcctcccggccgctgcattccaaggct
gagcagcacctcatgtgcgaggagcacgaagatgagaagatcaatatctactgcctgagc
tgtgaagtgcccacctgctctctctgcaaggtcttcggcgcccacaaggactgtgaggtg
gccccactgcccaccatttacaaacgccagaagagtgagctcagtgatggcatctcaatg
ctggtggcaggcaacgaccgtgtgcaagcagtgatcacacagatggaggaggtgtgccag
accattgaggacaacagccggaggcagaagcagttgctaaaccagaggtttgaggccctg
tgcgcagttctggaggagcgtaagggtgagctgctgcaggcgctggccctgaagcaggag
gagaagctgcagcgcgtcaggggcctcatccgccagtacggagaccacctggaggcctcc
tctaagctggtggagtccgccatccagtccatggaggaaccgcagatggcgctctacctg
cagcaggccaaggagctgatcaataaggtcgggacaatgtcaaaggtggagctgggtgga
cggccggagccgggctatgaaagcatggagcaattcaccgtgagcgtggagcatgtggcc
gaaatgctgaggaccatcgacttccagccaggcgcttctggggaggaagaggatgaggag
gtagcgttggacggggaagagggcagcgcagggccagaggaagagcggctggaggggccg
gaaggtgagtgtgggcattggcggggtctgcctgctcctttcactgctcactctctcagc
ctcggcttcggcgacgatcgcatgaccatccatcccaaccttctcctaatctgggaccat
ttcgggggcggaagtggaatgaacccctgttgggcacctcctcgatatcaggcacggatt
cgcaagcccagtgccaagagggtcggtggtggtgcggcggcaccggggcttgagttcctg
ggagacttggggacgatggggaccgcaggaccctggctgaaagccgttctcgcggagccc
tcccgcagcatctggtcccctctcgccgacctgggagccccactttcccacgggtttaca
ccctgctgtggttccccgcgccccgcagcagaggccaacggctcttcggcacttttatta
aaaactagtaacgcggagagtgctcagggtatccctaggccgctctag
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