Phocoena phocoena (harbor porpoise): 136133762
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Entry
136133762 CDS
T11058
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc01524
Platinum drug resistance
pphc03430
Mismatch repair
pphc05200
Pathways in cancer
pphc05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136133762 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
136133762 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
136133762 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
136133762 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136133762 (MSH2)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136133762 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
136133762
NCBI-ProteinID:
XP_065747171
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Position
14:complement(51088411..51161702)
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AA seq
947 aa
AA seq
DB search
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKT
QGVVKYMGPAGAKTVESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLAQFEDILFGNNDMSASIGVVGVKMSTVDGQRQIGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAVSSLCAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQHFFWFSLLLIFSSVENHE
FLVKPSFDPNLSELREIMDDLEKKMQSTLISAARELGLDPGKQIKLDSNTQFGYYFRVTC
KEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSG
YVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDE
VAFIPNDVHFEKDKQVFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDC
ILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS
EYIATRICAFCMFATHFHELTALASQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFG
IHVAELANFPRHVIECAKQKALELEEFQNIGKPQECDEMEPAAKRCYLEREQGEKIIQEF
LSKVKQVPFTEMSEENIVMKLKQLKAEVIAKNNRFVNEIISRIKVTT
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaagagacgctgcagctggagagcgcggccgaggtcggcttcgtg
cgcttcttccagggcatgccggagaagccgaccaccacggtgcgcctcttcgaccggggc
gacttctatacggcgcaccgggaggacgcgctgctggccgcccgggaggtgttcaagacc
cagggggtggtcaagtacatgggaccggcaggagcaaagactgtggagagtgttgtactt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaacagagctggaaataaggcctccaaggagaatgattggtatttggca
tttaaggcttctccaggtaatcttgctcagtttgaagacattctctttggtaacaatgat
atgtcagcttccattggtgttgtgggtgttaaaatgtctacagttgatggccaaagacag
attggagttgggtatgttgactccatacagaggaagctaggactgtgtgagtttcctgat
aatgatcaattctccaatctggaggctctcctgattcagattggaccaaaggaatgtgtt
ttaccaggaggagagactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattctgatcacagaaagaaaaagagctgacttttccacaaaagatatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagaacaggtgaatagtgctgtgttgccagaa
atggagaatcaggttgcagtttcttcattgtgtgcagtaatcaagtttctagaactctta
tcagatgattcaaactttggacagtttgaactgactacttttgacttcagccagtacatg
aaattggatattgcagcagtcagagcccttaaccttttccagggttccgttgaagatact
actggctctcagtctctggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctggttaaccaatggattaagcagcctctcatggacaagaacagaatagaagagagatta
aatttagtcgaagcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaacagacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttatcgactctatcagggtataaatcaactccctaatgttattcaggct
ctggaaaaatatgaaggaaaacatcaggcattgttgttggcagtttttgtgactcctctt
attgatcttcgttctgatttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcagcactttttttggtttagtttactacttattttctcatctgtggaaaaccatgaa
ttccttgtaaaaccttcatttgatcctaacttgagtgaattaagagaaataatggatgac
ttagaaaagaagatgcagtcaacattaataagtgcagctagagaactaggcttggatcct
ggcaaacagattaaactggattccaacacacaatttggatattattttcgcgtaacatgc
aaggaagaaaaagtccttcgtaataataaaaatttcagtacagtagatatccagaagaat
ggtgttaaatttacgaacagtaaattgacttctctcaatgaagagtataccaaaaataaa
accgaatatgaggaagcccaggatgccattgttaaggaaattgtcaatatttcttcaggc
tatgtagaaccgatgcagacactaaatgatgtgttagctcagctagatgctgttgttagc
tttgctcacgtgtccaatggagcacctgttccatatgtacggccggtcattttggagaaa
ggacaagggagaattatactgaaagcatccagacatgcttgtgttgaagttcaagatgaa
gttgcatttattcctaatgatgttcactttgaaaaagataaacaggtgttccacatcatt
actggtcccaacatgggaggtaaatcaacatatattcgccagactggggtggtagttctc
atggcccagattgggtgttttgtgccatgtgagtcagcagaagtgtccatcgtggactgc
atcttggcccgggtaggggctggtgacagtcagttgaaaggagtctccacattcatggct
gaaatgttagaaactgcttctattctcaggtctgcaaccaaagattctttaataatcata
gatgaattgggaagaggaacctctacctatgacggatttgggttagcgtgggctatatca
gagtacattgcaacaaggatctgtgctttttgcatgtttgcaacccattttcatgaactt
actgccttggccagtcagataccaactgttaataatctacatgtcacagcactaactact
gaagagaccttaactatgctttatcaggtgaagaaaggtgtctgtgatcagagttttggg
attcacgttgctgagcttgctaatttccccaggcatgtaatagagtgtgctaaacaaaaa
gccctggaactagaggagtttcagaatattgggaagccacaggaatgtgatgaaatggaa
ccagcagcaaagaggtgctatctggaaagagagcaaggtgaaaaaattattcaagagttt
ttatccaaggtgaagcaagtgccctttactgaaatgtcagaagaaaacatcgtaatgaag
ttaaaacagctgaaagctgaggtgatagcaaagaataatcgttttgtaaatgaaataatt
tcaagaataaaggtaactacatga
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