Phocoena phocoena (harbor porpoise): 136133850
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Entry
136133850 CDS
T11058
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc01524
Platinum drug resistance
pphc03430
Mismatch repair
pphc05200
Pathways in cancer
pphc05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136133850 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
136133850 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
136133850 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
136133850 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136133850 (MSH6)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136133850 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
WPP
Motif
Other DBs
NCBI-GeneID:
136133850
NCBI-ProteinID:
XP_065747322
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Position
14:complement(50836400..50854188)
Genome browser
AA seq
1363 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNASKDPVRASSESAAAAATGASPPSPGGDAAWSEAGPGPGPL
AGSTSRAEARNLNGGLRKSAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGKSSKSKEAQKGGHFYSSKPEILRAMQ
RADEALNKDKIKRLELAVCDEPSEPEEEEETEAGATYASDKSEEENEIESEEEVRPKVQG
SRRSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDNPVKVA
PKRKRMITGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSAPQNSESQAHVSGGCD
DSSRPTIWYHETLEWLKEEKRRDKHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIK
SQNFDLVIFYKVGKFYELYHMDALTGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKG
YKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSK
YLLSLKEKEDDSSGHARVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE
KGNLSVETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDSGVMLPQ
VLKGMTSESDSVGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTV
RATGPGAVFAKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLDKIDTCYTPFGKRLLKQW
LCAPLCNPYVISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNH
PDSRAIMYEETTYSKKKIIDFLSALEGFKVLCKIIGVMEEVVDDFKSKILKQVLTLQAKN
PEGRFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEK
QRSRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLAN
LINAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRP
VILLPEEDTPPFLDLKGSRHPCITKTFFGDNFIPNDILIGCEEEEENGKAYCVLVTGPNM
GGKSTLMRQAGLLVVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSET
ASILKHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYS
QNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGH
RKAREFEKMTQSLRLFREVCLASERSTVDAEAVRKLLTLIEEL
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacaaagcacgctgtacagcttcttccccaagtctccagccctgaataatgcc
agcaaagacccggtcagggcctcaagtgaaagcgccgccgccgctgccaccggggcctct
cccccttccccaggcggggatgcggcctggagcgaggccgggcctgggccggggcccctg
gcgggctccacttcgcgggccgaggcgaggaacctcaacggagggctgcggaagtcggca
gcccctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcagaaggctattaaagccatatacaggtaaaagttcgaagtcaaag
gaagcccagaaaggaggtcatttctacagttcaaagcctgaaatactcagagcaatgcaa
cgtgcagatgaagccttgaataaagacaagattaagaggcttgaattggcagtgtgtgat
gagccctcagaaccagaggaggaagaagagacggaggcaggtgccacttacgcatcagat
aagagtgaagaagaaaatgaaattgagagtgaagaggaagtgaggccaaaggtgcaagga
tctaggcgaagtagccgccagataaaaaagcgaagggtcatatcagactctgagagtgac
attggtggctctgatgtggaatttaagccagatgctaaggaggaaggaagcagtgatgaa
ataagcagtggagtaggggatagtgacagtgaaggcctggacaaccctgttaaagttgct
ccgaagaggaagagaatgataactggtaatggctccctcaaaaggaaaagttcaaggaag
gaaatgccctcggccaccaaacgagcaactggcatttcatcagaaaccaagaatactttg
agtgctttctctgcccctcaaaattctgaatcccaagcccacgttagtggaggatgtgat
gacagtagtcgccctaccatctggtatcatgaaactttagagtggcttaaggaggagaag
agaagagataagcacaggaggcgacctgatcaccctgattttgatgcatccacactctat
gtgcctgaggatttccttaattcctgtactcctgggatgagaaagtggtggcagattaag
tctcagaactttgatcttgtcatattttataaggtggggaagttttatgagctctaccac
atggatgctcttactggagtcagtgaactagggctggtattcatgaaaggcaactgggcc
cattctggtttccctgaaattgcatttggccgatattcagattccctggtccagaagggc
tataaagtagcacgggtggaacagaccgagaccccggaaatgatggaggcacgatgccga
aagatggcacatatatctaagtatgatagagtggtgaggagggagatctgtagggtcatt
accaagggtacacagacctacagtgtgctggaaggtgacccctcggagaactacagtaaa
taccttcttagcctcaaagaaaaagaagatgattcttctggccacgctcgagtgtacgga
gtatgttttgttgatacctcgctagggaagttcttcataggtcagttttcagatgatcgc
cattgttccaggtttaggacgttagtggcacactatcctccagtacaagtcttgtttgag
aaaggaaatctctcagtggaaactaagatgattctcaagggttcattgtcctcttctctt
caggaaggtctgataccaggttcccagttttgggatgcagccaaaactttgagaactctc
cttgaagaagggtattttacagacaagttaaatgaggacagtggggtgatgttaccccag
gtgcttaaaggtatgacctcagagtctgattctgttgggttgacaccgggagagaagagt
gaattggccctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgat
caggagcttttatcaatggctaattttgaagaatatattcccttggattctgacacggtc
cgtgctacaggacctggtgctgtatttgctaaagccagtcaacgaatggtgctagatgct
gtgacattaaacaacttggagatttttctgaatggaacaaatggttctactgaagggacc
ctgttagacaagattgatacttgctatactcccttcggtaagcggctcctaaagcaatgg
ctttgtgccccactctgtaacccttatgttatcagtgatcgtctagatgccatagaagac
ctaatggttgtgcctgacaaaatctctgaggttgtagaccttctaaagaagcttccagac
cttgagaggctactgagtaaaattcataatgttggctcacccctgaagagccagaaccac
ccagatagcagggctataatgtatgaagaaaccacatacagcaaaaaaaagattattgat
tttctttctgctctggaaggattcaaagtactatgtaaaattataggggttatggaggaa
gtcgttgatgactttaagtctaaaatccttaagcaggtccttactctgcaggcaaaaaat
cctgaaggccgctttcctgatttgactttagaactaaaccgatgggatacagcctttgac
catgaaaaggctcgaaagactggactgattactcccaaggcaggatttgactctgattat
gatcaagctcttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaa
cagcgtagtagaattggctgtaggaccatagtctactggggaattggtaggaatcgctac
cagttggaaattcccgagaatttcatcacccgtaatttgccagaagaatatgagttgaaa
tctaccaagaagggctgtaaacgatactggaccaaaacaattgagaaaaagttggctaat
ctgataaatgctgaagaacggagagatgtatcattaaaggactgcatgcggcgactgttc
tataactttgataaaaattacaaggactggcaggctgctgtggagtgcatcgcagtgttg
gatgtcttactgtgcctggccaactacagtcgagggggtgatggtcctatgtgtcgtcca
gtaattctgttgccagaagaagatactcctccctttctagaccttaaaggatcacgccac
ccctgcattacgaagactttttttggtgataactttattccaaatgacattctaataggc
tgtgaggaagaggaagaaaatggcaaagcttactgtgtgcttgttactggaccgaatatg
gggggcaagtctacgctcatgagacaggccggcctactggttgtaatggcccagatgggt
tgctatgtaccagctgaagtgtgtaggctcacaccaatcgacagagtgtttactagactt
ggtgcctcagacagaataatgtcaggcgaaagtacattttttgttgaattgagtgaaact
gccagtatacttaaacatgcaacagcacattctctggtgcttgtggatgaattaggaaga
ggtactgcaacatttgatgggacagcaatagcaaatgcagttgttaaagaacttgctgag
aatataaagtgtcgtacattgttttctacccactaccattcattagttgaagactattct
caaaatgttgcagtgcgcctaggacacatggcatgcatggtagaaaatgaatgtgaagat
cccagccaggagactattaccttcctgtataaattcattaaaggagcctgtcctaaaagc
tatggctttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacat
agaaaagcaagagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgt
ctggctagtgaaaggtcgactgtagatgctgaagctgtccgtaagttgctgactttgatt
gaggaattatag
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