Phocoena phocoena (harbor porpoise): 136133999
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Entry
136133999 CDS
T11058
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04512
ECM-receptor interaction
pphc04514
Cell adhesion molecule (CAM) interaction
pphc04820
Cytoskeleton in muscle cells
pphc05144
Malaria
pphc05205
Proteoglycans in cancer
pphc05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136133999 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
136133999 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
136133999 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
136133999 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
136133999 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
136133999 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136133999 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
pphc04090
]
136133999 (SDC1)
00535 Proteoglycans [BR:
pphc00535
]
136133999 (SDC1)
Membrane trafficking [BR:
pphc04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
136133999 (SDC1)
CD molecules [BR:
pphc04090
]
Proteins
136133999 (SDC1)
Proteoglycans [BR:
pphc00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
136133999 (SDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
136133999
NCBI-ProteinID:
XP_065747506
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All DBs
Position
14:74961595..74983498
Genome browser
AA seq
310 aa
AA seq
DB search
MRRPALWLWLCALALRLQPALPQTVAVNVPPEDQDGSGDDSDSFSGSGAGALPDLTLSQQ
TPSTWKDKGLLTATPTAPEPSRPDTTVTSTSILPTGEQPEEGGLVLLGELEPGLTAQEKE
ATHPPSGTTLYPTTHRASTARATVAQGPATSHPHRGVQPDHHETSAPTGHGQLEPQAPGV
EDGASATTEKATEDEAPTQLPEGEGSGEQDFTFDVSAENSAGATVEPGQRNVPPGDPGAT
GASQGFLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPSKQEEFYA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcccggcgctctggctctggctctgcgcgctggcgctgcgcctgcagccggcc
ctcccgcaaactgtggctgtaaacgtgccccccgaagatcaggatggctctggagatgac
tccgacagcttctctggctcgggcgcaggcgctctgccagatctcaccttgtcacagcag
accccctccacctggaaggacaaggggctcctgacggccacgcccacggctccagagccc
agccgcccggataccacggtcacctctacctccatcctgccgactggagagcagcctgag
gagggggggctggtgctcctaggagagctggaacctggcctcaccgcccaagagaaggag
gccacccacccacccagtgggaccacgctgtacccaaccacccaccgggcatcgacagcc
agagctaccgtggcccaggggcctgccacctcccatccccacaggggcgtgcagcctgac
caccacgagacctcagctcccacaggtcacggtcagctcgagcctcaggctcccggcgtg
gaggatggagcctctgctaccaccgagaaggctactgaggatgaagcccccacccagctc
ccagaaggagagggctctggcgagcaggacttcacctttgacgtgtcggcggagaactca
gccggggccactgtggaacctggccagcggaatgtgcccccaggggatcccggggccacg
ggggcctcgcagggcttcctggacaggaaggaagtgctgggaggggtcattgccggaggc
ctcgtgggactcatctttgctgtgtgcctggtgggtttcatgctgtaccggatgaagaag
aaggacgagggtagctactccttggaggagccgaagcaagccaatggcggggcctaccag
aagcccagcaaacaggaggagttctacgcctga
DBGET
integrated database retrieval system