Phocoena phocoena (harbor porpoise): 136134223
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Entry
136134223 CDS
T11058
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pphc03041
]
136134223 (DDX1)
03016 Transfer RNA biogenesis [BR:
pphc03016
]
136134223 (DDX1)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136134223 (DDX1)
Spliceosome [BR:
pphc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
136134223 (DDX1)
Transfer RNA biogenesis [BR:
pphc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
136134223 (DDX1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
136134223
NCBI-ProteinID:
XP_065747763
LinkDB
All DBs
Position
14:complement(78717040..78750849)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLTKGKHCYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDMDKGHVKFSKNGKDLGLAFEIPPHMKNQGLFPACVLKNAELKF
NFGEEEFKFPPKDGFVALAKAPDSFIVKSQHTGNAQVAQAKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLDSGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKADRIWERLGKNHIRTDEVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
EVEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttctccgagatgggtgttatgcctgaaattgctcaagctgtggaggagatg
gattggcttctcccaactgatatccaggctgagtccatcccactgatcctaggaggaggt
gatgtccttatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
atccagatagtttatgaaactctgaaagaccaacaagaaggcaaaaaaggaaaagcgaca
attaaaactggtgcttcagtgctgaacaaatggcaaatgaacccatatgacagaggatct
gcttttgcaattgggtcagatggtctttgttgtcagagcagagaagtaaaggaatggcat
ggatgtagagctactaaaggattaacgaaagggaaacactgctatgaagtatcctgtcac
gaccaaggattgtgcagagttgggtggtcttctatgcaggcttccctagacctaggtact
gacaagtttggctttggctttggtggaacgggaaagaaatctcacaataaacaatttgat
aattatggagaggaattcactatgcatgataccattggatgttacctagatatggataaa
gggcatgtcaagttctccaaaaatggaaaagaccttggcctggcatttgaaataccacca
catatgaagaaccaaggcctctttcctgcctgtgtcttgaagaatgctgaactaaaattc
aacttcggggaagaagaatttaagtttccaccgaaagatggttttgttgcccttgccaag
gcaccggatagtttcattgtcaaatcacagcacacaggtaatgctcaggtggcacaagcg
aagtttctccccaatgctccaaaagctctcattgtcgaaccttcccgagagttggctgaa
caaactttgaataacgtcaagcagtttaagaaatacgtcgataatcctaaattaagggag
cttctgataattggaggtgttgcagcacgggatcagctctctgttttggacagtggggta
gatatagttgttggcactccaggaagactggacgatttggtgtcaactggaaagctgaac
ttatcccaagttagattcctggtcctggatgaagctgatgggcttctttctcaaggttac
tctgattttataaataggattcacaatcagattcctcagattacctctgatggaaaaaga
cttcaggtgattgtctgctcagccactttgcactcttttgatgtgaagaaactgtctgag
aagatcatgcactttcccacctgggttgatttgaaaggagaagattctgttccagatacc
gtccaccatgttgttgtcccagtgaatcccaaagctgacagaatctgggaaaggcttggg
aaaaaccacattaggactgatgaagtacatgcaaaagataatacaagacctggtgcaaac
agtccagagatgtggtctgaagctattaaaatcctgaagggggagtatgctgtccgtgca
atcaaggaacacaagatggatcaagcaattattttctgtagaaccaaaatcgactgtgat
aacttggagcagtatttcatgcagcaaggaggaggacctgataaaaaggggcaccagttc
tcatgtgtttgtcttcatggtgacagaaagcctcatgagaggaagcaaaacttggaaaga
ttcaagaaaggagatgtaagattcttgatttgcacagatgtagccgccagaggaattgat
atccatggtgttccttatgttataaatgtcaccttgcctgatgaaaagcaaaactacgtc
catcgaatcggcagagtaggaagagctgaaaggatggggctggccatttccctggtggca
acagaaaaagagaaggtttggtaccacgtatgtagcagccgtggaaaagggtgttacaac
acaagactcaaggaagatggtggctgtaccatatggtacaatgagatgcagttgctgtct
gaggtagaagaacatctgaactgtaccatttcgcaggttgagccagatataaaggtacca
gtggatgaatttgatgggaaagttacttatggtcaaaaaagagctgctggtggtggaaac
tataaaggccatgtggatatcttggcacctacggttcaagagctggctgcccttgaaaag
gaggcacagacgtctttcctgcatcttggctatcttcctaaccagttgttcagaaccttc
tga
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