Phocoena phocoena (harbor porpoise): 136134230
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Entry
136134230 CDS
T11058
Symbol
TIA1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136134230 (TIA1)
03041 Spliceosome [BR:
pphc03041
]
136134230 (TIA1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
136134230 (TIA1)
Spliceosome [BR:
pphc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
136134230 (TIA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
RRM_10
RRM_3
Nup35_RRM_2
Calcipressin
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
136134230
NCBI-ProteinID:
XP_065747772
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Position
14:31037559..31065117
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AA seq
386 aa
AA seq
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MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA
AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDVINPVQQQNQI
GYPQAYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQPWNQQGFNQTQSSAPWMGPNYGV
QPPPGQNGSMMPNQPAGYRVAGYETQ
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaaatgcctaagactctatatgtcggtaacctttcccgagatgtgacagaa
gctttaattctccagctctttagccagattggaccttgtaaaaactgcaaaatgattatg
gatacagctggaaatgatccatattgttttgtggagttttatgagcatcgtcatgcagct
gcagcactagctgctatgaatgggcggaagataatgggtaaggaagtcaaagtgaattgg
gcaacaacccccagcagtcaaaagaaagatacaagcagtagtaccgttgtcagcacacag
cgttcacaagatcatttccatgtctttgttggtgatctcagtccagaaattacaactgaa
gatataaaagctgcttttgcaccatttggaagaatatcagatgcccgagtggtaaaagac
atggcaacaggaaagtctaagggatatggctttgtctcctttttcaacaaatgggatgct
gaaaacgccattcaacagatgggtggccagtggcttggtggaagacaaatcagaactaac
tgggcaacccgaaagcctccagctccaaagagtacatatgagtcaaacaccaaacagcta
tcatatgatgaggtcgtaaatcagtctagtccaagcaactgtactgtgtattgtggaggt
gtcacttctgggctaacagaacaactaatgcgtcagactttttcgccatttggacaaata
atggaaattcgagtctttccagataaaggatattcttttgttcggttcaattcccatgaa
agtgcagcacatgcaattgtttctgttaatggaactaccattgaaggccatgttgtgaaa
tgctactggggcaaagaaactcttgatgtgataaatcccgtgcaacagcagaatcaaatt
ggatatccacaagcttatggccagtggggccagtggtatgggaatgcacaacaaattggc
caatatatgcctaatggttggcaagtacctgcatatggaatgtatggccagccatggaac
cagcagggatttaatcagacacagtcttctgcaccgtggatgggaccaaattatggagtg
cagccgcctccaggacagaatggcagcatgatgcctaatcagcctgcagggtatcgagtc
gcagggtatgaaacccagtga
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