Phocoena phocoena (harbor porpoise): 136134343
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Entry
136134343 CDS
T11058
Symbol
CPSF4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
pphc05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136134343 (CPSF4)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
136134343 (CPSF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136134343 (CPSF4)
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136134343 (CPSF4)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136134343 (CPSF4)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136134343 (CPSF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-C3H1
zf-CCHC_3
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
136134343
NCBI-ProteinID:
XP_065747860
LinkDB
All DBs
Position
15:6076393..6090872
Genome browser
AA seq
269 aa
AA seq
DB search
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
LPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRAPQVIGVMQSQNSSAGNRGPRPL
EQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaatcatcgccagcgtggaccacatcaagttcgacttggagatcgcggtggag
cagcagcttggggcgcagccgctgcccttccccggcatggacaagtcgggggctgctgtc
tgcgaattctttttgaaagctgcctgtggcaaagggggcatgtgcccgttccgccacatc
agcggcgagaagacggttgtgtgcaaacactggctgcgggggctgtgcaagaagggggac
cagtgcgagttcctgcacgagtacgacatgaccaagatgcccgagtgctacttctactcg
aagttcggggagtgcagcaacaaggagtgccccttcctgcacattgaccccgagtccaag
atcaaggactgtccttggtacgaccgtggcttctgcaagcatggccccctgtgcaggcac
cggcacacacggagagtcatctgtgtgaattacctcgtgggattctgcccagaggggccc
tcgtgtaaattcatgcaccctagatttgaactgccgatgggaaccaccgagcagccccca
ctgccgcagcagacgcagcctcccgcaaagcaaagtaacaatccgccattacaaaggtcg
tcctccttgatccagttaacgagtcagaactcttctcccaaccagcagagagccccgcag
gtcatcggggtcatgcagagtcaaaacagcagcgcaggcaaccggggaccccggccgctg
gagcaggtcacctgttacaagtgtggtgaaaaaggacactacgccaacagatgcaccaaa
gggcacttggcctttctcagtggacagtga
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