Phocoena phocoena (harbor porpoise): 136134379
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Entry
136134379 CDS
T11058
Symbol
RABGEF1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
136134379 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136134379 (RABGEF1)
Membrane trafficking [BR:
pphc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
136134379 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
136134379 (RABGEF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
SSTK-IP
Motif
Other DBs
NCBI-GeneID:
136134379
NCBI-ProteinID:
XP_065747936
LinkDB
All DBs
Position
15:complement(14449355..14485287)
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AA seq
492 aa
AA seq
DB search
MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER
LQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKAEIQE
PKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLETMHYKRDLSIEEQS
ECTQDFYQNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ
KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF
NAIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL
CCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQ
LNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIRPPNQSLASIDSENVENDK
LPPPLQPQVYAG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttaagtctgagcgccgaggaattcatgtggatcaatcagagctcctgtgcaag
aaaggatgtggttattacggcaaccctgcttggcagggtttctgctccaagtgctggagg
gaggagtaccacaaagccaggcagaagcagattcaggaggattgggaactagcagagcga
ctacagcgggaggaagaagaggcctttgccagcagtcagagcagccaaggggcccaatcc
ctcacattttccaagtttgaagaaaagaaaaccaatgagaagacccgcaaggttaccaca
gtgaagaaattcttcagtgcttcatccagggttggatcaaagaaggcagaaattcaggaa
ccaaaagctcccagtccttctataaaccggcaaaccagcattgaaacggatagagtgtct
aaagagttcatagaatttctcaagaccttccacaagacaggccaagaaatctataagcag
accaagctgtttttggaaacaatgcattacaaaagggatttaagcattgaggaacagtca
gagtgtactcaggatttttaccagaatgtggctgagagaatgcagactcgtggaaaagtg
cctccagaaagagttgagaagataatggatcagattgaaaagtacatcatgactcgtctc
tataaatatgtgttctgtccagaaactactgatgatgagaagaaagatctcgctattcaa
aaaaggatcagagccctgcactgggttacacctcagatgctttgtgtccctgttaatgaa
gaaattccagaagtgtctgatatggtggtgaaagcaattacagatatcattgaaatggat
tctaagcgtgtgccccgggataagttggcctgcatcaccaagtgcagcaagcacatcttc
aatgccatcaaggtcaccaagaacgagccagcttcagctgatgacttcttacccactctc
atctacattgttctgaagggcaaccccccacgccttcagtccaatatccagtatatcacc
cgcttctgcaacccaagccgattgatgactggagaggatggctactatttcaccaacctg
tgttgtgccgtggctttcattgagaaattagacgctcaatctttgaatttaagtcaggaa
gattttgatcgatacatgtctggccagacttctcccaggaagcaggaatctgagaattgg
tctcctgatgcttgcttaggtgttaagcagatgtataagaatttggatctcctgtctcaa
ttgaatgaacggcaggaaaggattatgaatgaagccaagaagcttgagaaagacctaata
gattggacggatggaatcgcaaaagaggttcaagacattgttgagaaatacccgcttgaa
attaggcccccaaatcagtctttagcgtctattgactctgaaaatgttgaaaatgataaa
cttcctccaccattgcaacctcaagtttatgcaggatga
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