Phocoena phocoena (harbor porpoise): 136134406
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Entry
136134406 CDS
T11058
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04612
Antigen processing and presentation
pphc05145
Toxoplasmosis
pphc05152
Tuberculosis
pphc05164
Influenza A
pphc05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
136134406 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
136134406 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
136134406 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
136134406 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
136134406 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pphc01001
]
136134406 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pphc04054
]
136134406 (CIITA)
Enzymes [BR:
pphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
136134406 (CIITA)
Protein kinases [BR:
pphc01001
]
Serine/threonine kinases: Other
TAF1 family
136134406 (CIITA)
Pattern recognition receptors [BR:
pphc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
136134406 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
nSTAND_NTPase5
LRR_9
Motif
Other DBs
NCBI-GeneID:
136134406
NCBI-ProteinID:
XP_065747988
LinkDB
All DBs
Position
15:complement(29327965..29375715)
Genome browser
AA seq
1159 aa
AA seq
DB search
MNHFQTILSQVRMLLSSHRPSQVQALLDNLLAEDLLSREYHYALLHEPDGEALARKISLT
LMEKGDPDLAPLGWIWSGLQAPAAERDSGYKDPGGNGQHTTMELGPLEGGYLELLNSNAD
PLHLYHLYDRMDLAGEEELELCSEPDTDTINCEQFSRLLCDMEGDEETREAYANIAELDQ
YVFQDSQLEGLSKDIFIEHIGLEEMISESVEVLEEAGQKSQKRPFPEELPVDLKHRKLVP
PSSSLLSCLSLPAGPIQIIPTLSTLPQGLWQISGAGTGISSILIYQSEMPQAHQTPASSS
TAVHSLPKSPDRPGSTSPFAPSAADLPSMPEPALTSRTNLTEDEMSTTQCPAAHEASSKL
PKWPESVEQFYCSLRNKYQAKPAGPEGILVEVDLVRVRLERSGGKSQDRELTTLDWAERQ
PARGSLGKVLLASSNHRRPRETQVIAVLGKAGQGKSHWVRAVSWAWACGQLPQYDFIFCI
PCHCLDRPGDTYRLQDLLFSLGSQPLSVDDEVFSYILRRPDRILLILDAFEELEAQDGFL
HSTGGPMSAEARSLRGLLAGLFQRKLLSGCTLLLTARPRGRLAQSLSKADALFEVAGFSA
QQAETYVMRYFECSGTTEHQKRALALLQSQPFLLSHSHSPTVCRAVCQLLEALLELGDEA
QLPSTLTGLYVGLLGPGARDSPPGALVGLARLAWELGRGHQSSLREGQFPSTEVRVWAVA
QGLVQPTPGAPETKLAFSSFLLQCFLGAVWLALSSEIKDKELPQYLALTPRKKRPYDNWL
EGVPRFLVGLVFQPRACCLGALAGLAGSTSADRKQKVLTRYLKRLQPGTLKAGRLLELLH
CAHEALDAGLWQHVLQGLPAHLSFLGTRLTPPDTHVLGSALEAAGRDFSLDLRSTGVDPS
GLGSLVGLSCVTHFRAALSDTVELWESLQQHGEAKLLQAVKEKFTIEPFKAESMKDVEDL
GNLVQIQRTRSSSEDTPGELPAIRDLKKLEFALGPILGPQAFPKLVKILEAFSSLQHLDL
DSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDLGACKLAEALPLLAASLLRLSL
YNNCICDVGAESLAHVLPDMVSLRVLDVQYNKFTAAGAQQLTASLRKCPHVEKLAMWTPT
IPFGVQEHLQQLDSRIILR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacttccagaccatcctgagtcaggtccggatgctgctctccagccatcggccg
agccaagtgcaggcgcttctggacaacctgctggcagaggatcttctctccagggagtac
cactacgccctgctccatgagcctgatggtgaggctctggccaggaagatctccttgacc
ctgatggagaaaggagacccagacttggcccccttggggtggatctggagtgggctgcag
gccccggcagccgagagggactccggctacaaggaccctgggggtaatggacagcacaca
accatggagttggggcctctagaaggtgggtacctggagcttctcaacagcaatgctgac
cctttgcatctctaccacctctatgaccggatggacctggctggagaagaagagctagag
ctctgctcagaacctgatacggacaccatcaactgcgaacagttcagcaggctgttgtgt
gatatggaaggtgatgaagagaccagggaggcttatgccaatatcgcggaactggaccag
tatgtcttccaggattcccagctggagggcctgagcaaagacattttcatcgagcacata
ggactggaagaaatgatcagcgagagtgtggaggtgctggaggaagcaggacagaaaagt
cagaaaagacccttcccagaggagctgcctgtggatctgaagcacaggaagctagtgccc
ccttccagttccttgttgagctgcctgagtctccctgctggacccatccagatcatcccc
actctctccactctgccccaggggctctggcaaatctcaggggctgggacagggatctcc
agtatactcatctaccaaagtgagatgccccaggcccaccaaacacccgcctccagcagc
acagctgtccacagcctcccgaagtccccagaccggcccggctccaccagcccctttgcc
ccatcggcagctgacctccccagcatgcctgaaccagccctgacctcccgtacaaaccta
acagaggatgagatgtccaccacccaatgcccagcagctcacgaggcatccagcaagctt
cccaagtggcctgagagtgtggaacaattctactgctcgctacggaacaagtaccaggct
aagcctgcaggcccggaaggcatcctggtggaggtggacctggtgagggtaaggctggag
aggagcggcggcaaaagccaggacagagagctgaccaccctggactgggcagagcggcag
ccggcccgaggaagtctgggcaaggtgctgctggcctctagcaaccaccggcggccacgt
gagacgcaggtgatcgccgtgctgggcaaagcaggacaggggaagagtcactgggtccgg
gccgtgagctgggcctgggcctgcggccagctgccacagtacgactttatcttctgcatc
ccctgccactgtttggaccgtccgggggacacctaccgcctgcaggatctgctcttctcc
ctgggttcacagccactgtcagtggacgacgaggtcttcagttacatcttgaggaggccc
gaccgcattctgctcatcctggatgccttcgaggagctcgaggcccaagacggcttcctg
cacagcacgggcggacccatgtcagcagaagcccgctccctccgggggctgctggcaggc
ctcttccagcgcaagctgctgagcggctgcaccctgctgcttacagcccggccccggggc
cgcctggcccagagcctgagcaaggccgacgctctgttcgaagtggccggcttctccgcc
cagcaggccgagacctatgtgatgcgctactttgagtgttcggggaccaccgagcaccaa
aagagagccctggcgctcctccagtcccagccatttctcctgagtcacagccatagcccc
actgtgtgccgggctgtgtgccagctcttggaggccctcctggagctaggtgatgaggcc
cagctgccttccacgctcacgggcctctatgttggcttactaggcccaggagcccgtgac
agccccccaggggccctggtgggactggccaggctggcctgggagctgggccgcggtcac
cagagcagcctgcgggagggccagttcccatcgaccgaggtgagggtctgggctgtggcc
caaggcttggtgcagcccaccccgggggccccggagaccaagctggccttctccagcttc
ctcctgcaatgcttcctgggggccgtgtggctggctctgagcagcgaaatcaaggacaag
gagctgccgcagtatttggcattgaccccgaggaagaagaggccctatgacaactggctg
gagggcgtgccgcgctttctggtcgggctggtcttccagcctcgtgcctgctgcctggga
gccctggcagggctggcgggctccacctcagcggacaggaagcagaaggtgctcaccagg
tacctgaagcggctgcagcctgggacgctgaaggcggggcggctgctggagctgctgcac
tgcgcccacgaggcgctggatgctgggctttggcagcatgtgttgcaggggctcccggcc
cacctctcgttcctgggcacccggctcacacctcccgacacccacgtgctgggcagcgcc
ttggaggcggcgggccgagacttctccctggacctccgcagcactggcgttgacccctct
ggactggggagcctcgtgggactcagctgtgtcacccatttcagggctgccttgagtgac
acagtggagctgtgggagtccctacagcagcatggggaggccaagttactccaagcagtg
aaggagaagttcaccattgagcctttcaaggctgaatccatgaaggatgtggaagacctg
ggcaacctcgtgcagatccagaggacaagaagttcctctgaagacacgcctggggaactc
cctgccatccgagacttaaagaagctggagtttgcgctgggccccatcttgggccctcag
gcttttcccaaactggtgaagatccttgaggccttttcttcccttcagcatctggacctg
gactcgctgagtgagaacaagatcggggatgagggtgttgcccagctctcggccaccttc
cctcagctgaaggccctggagacgctcaatttgtcccagaacaatatcactgacttgggt
gcctgcaagctggcggaggccctgcccttgctggctgcgtccctcctcaggctgagcttg
tacaataactgcatctgcgatgtgggagctgagagcctggcacacgtgcttccagacatg
gtgtccctccgggtgctcgatgtccagtacaacaagttcacagctgccggggcccagcag
ctcactgccagcctgagaaagtgccctcacgtggagaagctggcgatgtggacgcccacc
atcccttttggcgtccaggaacacctgcagcagctggactcaaggatcatcctgagatga
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integrated database retrieval system
