Phocoena phocoena (harbor porpoise): 136134418
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Entry
136134418 CDS
T11058
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04140
Autophagy - animal
pphc04148
Efferocytosis
pphc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
136134418 (VPS16)
04148 Efferocytosis
136134418 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
136134418 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136134418 (VPS16)
Membrane trafficking [BR:
pphc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
136134418 (VPS16)
Hops complex
136134418 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
136134418
NCBI-ProteinID:
XP_065748009
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Position
15:complement(58623443..58645138)
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AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPGRKEKPA
SARPVLEIYSASGVPLASLLWKSGPMVSMGWSAEEELLCVQEDGVVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTMCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPEGIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAASFGKCFLDRFPPDSFVR
MCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHVRASYAAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGRFLDLSVHDTVTTLILSGQNKRAEQLARDFR
IPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNEAEMSLVLSHCTGATDGATADKIQRARAQVQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacaccgcgaactggaacccgcttggggactctgccttttaccggaaatat
gagctgtatagcatggactgggacctgaaggaggaactgagggactgcctggtggccgct
gcgccctatgggggccccattgcgctgctgaggaaccccgggcggaaggagaagcctgcc
agcgcacggccagttcttgagatctactcagcttctggtgtgcctctggccagtctgctg
tggaagagtgggcccatggtgtccatgggctggtcagctgaggaggagctgctctgtgtg
caggaagacggggtcgtgctggtttatgggcttcatggtgacttccggagacacttcagc
atgggcaatgaggtgctccagaaccgggttctagatgcccggatcttccatactgagttt
ggttctggggtggccatcctcacaggggcccaccgcttcaccctcagtgccaacgtgggc
gacctcaaactccgccggatgccagaggtgccaggtctgcagagcgcgccatcatgctgg
accacaatgtgccaggaccgagtggcacacattcttctggctgtaggacctgatctttac
ctcctggatcacgcagcctgctctgcagtgacaccccctggcctagccccaggagtgagc
agcttcctgcagatggctgtctccttcacctacagacacctggcgctcttcacagacaca
gggtacatctggatggggacagcgtctctcaaggagaagctgtgtgagttcaactgcaac
atccgggctcccccgaagcagatggtctggtgcagccgtcctcgcagcaaggagagggcc
gttgtggtagcctgggagaggcggctaatggtggtgggcgacgcacctgagggcatccag
ttcgtgctggatgaggactcctacctggtgcctgagctggatggggtccgcatcttctcc
cgcagtacccatgagttcttgcacgaggttccagtggccagcgaggagatctttaaaatt
gcctcaatggcccctggagcgctactgttggaagcccagaaggaatatgagaaagagagc
cagaaggcggatgagtacctgcgggagatccaggagctggggcagctgccccaggccgtg
cagcagtgcatcgaggctgcaggacatgagcactggccagacatgcagaagagtctgctc
agggcggcctcctttggaaagtgtttcctggacagatttccacccgacagctttgtgcgc
atgtgtcaggaccttcgtgtactcaatgccattcgggactatcacatcgggattcccctc
acctatagccaatacaagcagctcaccatccaggtgctgctggacaggcttgtgttgcgg
aggctttaccccctggccattcagatatgtgagtacctgcggcttcctgaagtgcagggc
gtcagcagaatcctggcccactgggcctgctacaaggtacaacagaaggacgtgtctgac
gaggatgttgctcgtgccattaaccagaagctgggggacacacctggtgtctcttactct
gacattgctgcacgagcctatggctgtggccgcacggagctggccatcaagctgctggaa
tatgagccacgctctggggaacaggttccccttctcctaaagatgaagaggagcaaactg
gcactaagcaaggccatcgagagtggggatactgacctggtgttcacggtgctgctgcac
ctgaagaatgagctgaaccgaggagactttttcatgacgcttcggaaccagcccatggcc
ttaagtttgtaccgacagttctgtaagcatcaagagctagagacgctgaaggacctttac
aatcaggatgacaaccaccaggagctgggcagcttccacgtccgagccagctacgctgca
gaggagcgtattgagggacgagtcgcagctctgcagacggcagccgacgccttctacaag
gccaagaatgagttcgcagccaaggccacagaggatcaaatgcggctcctacggctgcag
cgacgcctagaagatgagctggggggccggttcttagacctgtctgtacacgacacggtc
accaccctcatcctcagcggccaaaacaagcgcgcggagcagctggcacgtgacttccgc
atccctgacaagaggctctggtggctgaagctgaccgccctggcagatctggaagactgg
gaggagctagagaagttttctaagagcaagaaatcacccatcggctacctgccctttgtg
gaaatctgcatgaaacaacacaacaagtatgaagccaaaaagtatgcttcccgcgtgggt
cccgagcagaaggtcaaggccttgcttctcgttggggacgtggctcaggctgcagacgtt
gccatcgagcaccggaatgaggcagagatgagcctcgtattgtcccactgcactggagcc
acagatggggccacggctgacaagattcagcgggcccgggctcaagtccagaagaagtga
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