Phocoena phocoena (harbor porpoise): 136134420
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Entry
136134420 CDS
T11058
Symbol
ATXN2L
Name
(RefSeq) ataxin-2-like protein isoform X1
KO
K23625
ataxin 2/2L
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc05014
Amyotrophic lateral sclerosis
pphc05017
Spinocerebellar ataxia
pphc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
136134420 (ATXN2L)
05017 Spinocerebellar ataxia
136134420 (ATXN2L)
05022 Pathways of neurodegeneration - multiple diseases
136134420 (ATXN2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136134420 (ATXN2L)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
136134420 (ATXN2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
DUF5415
Motif
Other DBs
NCBI-GeneID:
136134420
NCBI-ProteinID:
XP_065748013
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Position
15:16555989..16566909
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AA seq
1119 aa
AA seq
DB search
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLASTSAPPGPPAAASPCLG
PAAAAGSGLRRGAESILAPPPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNN
SRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIV
DTMVFKPSDVMLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDD
YDLESDMSNGWDPNEMFKFNEENYGIKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLA
REIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREGP
RGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSETRGINGGPSRMSPKAQRPLRGAK
TLSSPSSRPSGEASVPPPPAVPGTHCSLASSDYHVALPFLPVGRMYPPRSPKSAAPAPIS
ASCPEPPIGSAVPTSSASIPVTSSVGDPGVGSISPASPKISLAPTDVKELPAKEPGRTLE
SQELSRIAGKVPGLQNEQKRFQLEELRKFGAQFKLQPSSSPETSLDPFPPRILKEEAKGK
EKEVDGLLASEPMGSPVSSKTESISDKEDKPPLPPAGGAEGPDQPPPPCPSQTSSPPVGL
IKGDDKDEGPVAEQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLT
AGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQH
QPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQ
SNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQPATTP
TGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSF
PQPAAVYAIHAHQQLPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPPQSHG
GPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRR
QGLAPGSVLCFPPSSLSCDPAAPLPTASPALSDPDCLLT
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctcccagccccagcagccgccccccacgcaa
caggccgtggcccgccggcctcccgggggcaccagccctcccaacggcggcctcccaggg
cccctggcctccacctcggctcccccagggcctcccgccgctgcttccccctgcttgggg
cctgcagccgctgccgggagcgggctccgccggggagctgagagcatcttggcgccgccg
ccgccgccgccgcagcaacatcaggagaggccaggggcagcggccatcggcagcgccagg
ggacaaagcacaggaaagggacccccacagtcaccggtgtttgagggtgtctacaacaat
tccagaatgctgcatttccttacagctgttgtgggctccacttgtgatgtaaaggtaaag
aatggtaccacctatgaaggtatcttcaagacactgagctcaaagtttgaactggcagta
gacgctgtgcaccggaaagcatcggagccagcaggtggtcctcgtcgggaagacattgtg
gacaccatggtgtttaagccaagtgatgtcatgcttgtccacttccgaaatgttgacttc
aattatgctactaaagacaagttcactgattcagccattgccatgaactcgaaggtgaat
ggggagcacaaggagaaggtgcttcagcgctgggaggggggcgacagcaacagcgatgac
tacgacctggagtctgacatgtccaatggatgggaccccaatgaaatgttcaagttcaat
gaggagaactacggcataaagaccacctatgacagcagtctctcttcttacacggtgccc
ttagagaaggacaactcagaagaatttcgtcagcgggagctgcgggcagcccagttggct
cgagagattgaatcgagcccccagtaccgcctgcggatcgccatggagaacgatgacggg
cgcaccgaggaggagaagcacagtgcagttcagcgacagggttcggggcgagagagcccc
agcttggcatctagggagggaaagtatatccctctaccccaacgagttcgggaaggtccc
cggggaggagttcgatgcagtagttcccggggtggccggcctggccttagctctttgcca
cctcgtggccctcaccatcttgacaatagcagccctggcccaggttctgagacacgcggt
atcaatggaggcccttcccgcatgtcccctaaggcacagcggcctctgagaggtgccaag
actctgtcttcccccagcagcaggccttctggagaagcttctgttccacctcctcctgca
gtccccggtacccattgctcattggccagcagtgactatcacgttgctctcccttttctt
ccagtaggccggatgtaccccccgcgctctcccaagtcagctgcccctgccccaatctca
gcttcctgtcctgagcctcccatcggctcagcagtaccgacctcttcagcttccatcccc
gtgacatcatcagttggggatcctggagtaggctccatttccccagcttctccaaagatc
tcactggcacccacagatgtaaaagaactcccagccaaggaacctgggagaacgctggag
tcccaggagctgtcccggatagcagggaaagtccctggccttcagaatgagcagaaacgc
tttcaactggaagaactgagaaaatttggggcccagtttaagcttcagcccagtagctcc
cctgagaccagcctggatccttttcctccccggatcctaaaggaggaggccaaagggaag
gagaaggaggttgatggtcttttggcttcagagcccatggggtcccctgtttcctccaag
acagaatccatatcggataaggaggacaaaccacccctgccaccagcaggaggcgccgaa
gggccggatcagcccccaccaccttgcccaagccaaaccagtagccccccagtgggcctc
atcaagggagatgacaaggatgagggccctgttgctgaacaagtgaagaagtcaacattg
aaccctaatgccaaggagttcaatcccactaagccgctgctgtctgtgaataaatccacc
agtactccaacttctcctgggccccggactcattcaactccctccatcccggtgctgaca
gcaggccagagtgggctatatagcccccagtacatttcctacatacctcagatccacatg
ggaccagccgttcaggcacctcagatgtatccatatcctgtgtccaactcagtgcctgga
cagcagggcaagtaccggggagcaaaaggctccctgcccccccagcgctcggaccaacac
cagccagcctcagcccctccgatgatgcaggccgccgccgctgctggcccccctctggtg
gctgccacaccttattcttcctacatcccctacaatccacagcagttcccaggccagccc
gccatgatgcagcccatggcccactacccctcgcagccggtgtttgcccccatgcttcaa
agcaacccacgcatgctgacgtcggggagccatccccaggccattgtgtcatcctccacc
cctcagtacccttctgcagagcagcccaccccccaagccctttatgccactgttcaccag
tcctatccacaccatgccacgcagctccatgcccaccagccgcagccggccaccacgcct
actgggagccagccgcagtcccagcatgcagcccccagtcccgtccagcaccaggcgggg
caggccccacacctgggcagtggacagccacagcagaacctgtaccacccaggggccctg
acaggcacgccgccttctctgccgccgggaccttctgcgcagtcccctcagagcagcttc
ccccagccagccgctgtgtatgctatccatgcccaccagcagctgccccacggcttcacc
aacatggcccatgttacccaggcccatgtccaaactggaatcacagcagccccgccccct
caccctggggctccccacccgccccaggtgatgctgctgcacccaccccagagccatggg
ggccccccccaaggcgcggtgccccagagtggggtgcctgcactctcagcttccacaccc
tcaccctatccctacatcggacacccccaaggtgagcagcctggccaggcgcctggattt
ccaggaggagccgatgacaggattctatgtagggtgggcagaagccacagtcgccgccgc
caggggcttgctcctggctctgtcctttgcttccctccgtcctcgctcagttgtgatcca
gcagcccccctccccactgcctccccagctctcagtgaccccgactgtctcctgacttag
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