Phocoena phocoena (harbor porpoise): 136134843
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Entry
136134843 CDS
T11058
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03030
DNA replication
pphc03410
Base excision repair
pphc03420
Nucleotide excision repair
pphc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136134843 (RFC2)
03410 Base excision repair
136134843 (RFC2)
03420 Nucleotide excision repair
136134843 (RFC2)
03430 Mismatch repair
136134843 (RFC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphc03032
]
136134843 (RFC2)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136134843 (RFC2)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136134843 (RFC2)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
136134843 (RFC2)
DNA Replication Termination Factors
ELG1-RFC complex
136134843 (RFC2)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
136134843 (RFC2)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
136134843 (RFC2)
Check point factors
HRAD17(Rad24)-RFC complex
136134843 (RFC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
nSTAND_NTPase5
AAA_14
AAA_16
Viral_helicase1
AAA_lid_RFC1
RCF1-5-like_lid
AAA_11
Mg_chelatase
Rad17
AAA_assoc_2
RuvB_N
nSTAND3
AAA_24
AAA_19
MipZ
AAA_18
AAA_5
AAA_28
DNAX_ATPase_lid
AAA_25
ABC_tran
AAA_23
AAA_30
NTPase_1
MeaB
SLFN-g3_helicase
RNA_helicase
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
136134843
NCBI-ProteinID:
XP_065748664
LinkDB
All DBs
Position
15:complement(9738375..9760255)
Genome browser
AA seq
352 aa
AA seq
DB search
MEAQESGGGSGECGAQDPDPAPSKAPGSAGQYELPWVEKYRPVKLNEIVGNEDTVSRLEV
FSREGNVPNIIIAGPPGTGKTTSILCLARALLGPAFKDAVLELNASNDRGIDVVRNKIKM
FAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ
SRCAVLRYTKLTDAQILARLLCVIEKEKVQYTDDGLEAILFTAQGDMRQALNNLQSTFSG
FGFINSENVFKVCDEPHPLLVKEMIQHCVSASIDEAYKILAHLWHLGYSPEDIIGNIFRV
CKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgcaggagagtggcggtggcagtggcgagtgcggggcccaggaccctgacccg
gcccccagcaaggcccccggcagtgccggccagtacgagctgccgtgggttgaaaaatat
agaccagtaaagctgaatgaaattgtcgggaatgaagacacagtgagcaggctggaggtc
ttttcgagagaagggaatgtgcccaatatcatcattgctggccccccaggaaccggcaaa
actaccagcatcctgtgtttggcacgagccctgctgggcccggccttcaaggatgccgtt
ttggagctcaatgcctcaaatgacaggggcattgacgttgtgaggaacaaaatcaaaatg
tttgcccaacagaaagtcacccttcccaaagggagacacaagatcatcatcctggatgaa
gcagacagcatgactgatggagcccagcaagccttgaggaggaccatggaaatctactcc
aaaacgacccgcttcgctcttgcttgtaatgcttcggataaaatcatagagcccattcag
tcccggtgcgcagtcctccgctacaccaagctgaccgacgcccagattcttgccaggctg
ctttgtgtcatcgagaaggagaaggtgcagtacacggacgacggcctggaagccatcctc
ttcaccgcccagggtgacatgaggcaggcattgaacaacttgcagtccactttctcggga
ttcggcttcatcaacagtgagaatgtgttcaaggtctgtgacgagccccaccccttgctg
gtgaaggagatgatccagcactgtgtgagtgccagtatcgatgaggcctacaagatcctc
gctcacctgtggcatcttggctattccccagaagacatcattggcaacatttttcgagtg
tgtaaaaccttccaaatggcagaatacttgaaactggagtttattaaggaaattggatac
actcatatgaaaatagcggaaggtgtgaactcccttctgcagatggcagggctcctggcc
aggctgtgtcagaagacaatggccccagtggccagttag
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