KEGG   Phocoena phocoena (harbor porpoise): 136134889
Entry
136134889         CDS       T11058                                 
Symbol
POLR2J
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a isoform X1
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03020  RNA polymerase
pphc03420  Nucleotide excision repair
pphc05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136134889 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    136134889 (POLR2J)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    136134889 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pphc03021]
    136134889 (POLR2J)
   03400 DNA repair and recombination proteins [BR:pphc03400]
    136134889 (POLR2J)
Transcription machinery [BR:pphc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     136134889 (POLR2J)
DNA repair and recombination proteins [BR:pphc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      136134889 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 136134889
NCBI-ProteinID: XP_065748729
LinkDB
Position
15:complement(8268708..8272586)
AA seq 117 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcgcctcccgccttcgagtcgttcttgctcttcgagggcgagaagaagatcacc
attaacaaggacaccaaggtacccaatgcctgtttgttcaccatcaacaaggaagaccat
acgctaggaaacatcattaaatcgcagctgctgaaggacccacaggtgctgtttgctggc
tacaaagtcccccaccccttggaacacaagatcatcatccgcgtgcagaccacaccagac
tacagcccccaggaggccttcaccaatgccatcacagacctcatcagcgagctctccctg
ctggaagagcggttccgggtggccatcaaagacaagcaagaaggaatcgagtag

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