Phocoena phocoena (harbor porpoise): 136135006
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Entry
136135006 CDS
T11058
Symbol
RNF40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pphc04121
]
136135006 (RNF40)
Enzymes [BR:
pphc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136135006 (RNF40)
Ubiquitin system [BR:
pphc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
136135006 (RNF40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
BRE1
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
ZapB
SpoIIE
Motif
Other DBs
NCBI-GeneID:
136135006
NCBI-ProteinID:
XP_065748873
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All DBs
Position
15:complement(15710781..15723056)
Genome browser
AA seq
1001 aa
AA seq
DB search
MSGPGNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLA
ERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRHHESQGELSS
GTEAPGTQEGPTRDETPLTEPGTSELREPLPMQLRPPLSEPALAFVVALGASSSEEVELQ
LQGRMEFSKAAVSRVVEASDRLQRQVEELCQRVYSRGDSEPPSEAARARTRELGRENRRL
QDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHL
AEALEQLNSGYYVSGSSSGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAEL
QGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATK
NSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPIN
REMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIAKLRAQASGSTHSIPTLGHPEDSGL
SAPAPGKEEGGPGPVGAPDARKEMASMPGAAITTSLVKKEDLVPSEEEAQALTPGAQGPS
SRAREPEAKPKRELREREGPGLGPPSVASALSRTDREKVKVEEAKRKESELLKGLRAELK
KAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKK
IADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLR
EKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQG
SLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREK
ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVL
TKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggcccggcaacaaacgcgccgccggcgatgggggctcggggcccccagagaag
aagctgagtcgcgaggagaagaccacaaccacgcttatagagcccattcgtcttgggggc
atctcttccacggaggagatggacttgaaggttttgcagttcaagaataagaaactggca
gagcggttggaacagagacaggcttgtgaagatgaactccgagaacgaattgagaagttg
gagaagcggcaggccacagatgacgccacactcctcattgtcaatcgctactgggcccag
ctggatgaaactgtggaagcccttctccgacaccatgagagccagggggagctgtcttcg
gggacagaggcgcctgggacccaggaggggccaacacgtgatgagacccctctcacagag
ccagggacatcggagctgagggagcccctgccaatgcagctgcggccacctctcagtgag
ccagccttggcttttgtggtggccctgggtgcaagcagtagtgaggaggtggagctgcag
ctgcagggccgcatggaattctccaaggcagctgtgtcccgtgtcgtggaggcctctgac
cgcctacagcgccaggtggaggaactctgtcagcgagtatacagccgaggggacagtgag
ccccccagtgaggcggctcgggcacgcacccgggagctgggccgtgagaaccggcgactg
caggacttggccacccagctacaggagaagcaccaccgcatctcgttggagtactctgag
ctccaggataaagtgacatctgcagagaccaaagtgctggagatggagacgacagtagaa
gacctgcagtgggacattgagaagttgcggaagcgtgagcaaaagctcaataagcaccta
gcggaggccttggagcagctcaactctggctactatgtatctgggagctcctcaggcttt
caggggggccagatcacactcagcatgcagaagtttgagatgctgaatgcggagttggag
gaaaaccaggaattggccaatagccgcatggcagagctggagaagctgcaggcggaactt
cagggggctgtgcggaccaatgagcgcctcaaggtagccctgcggagccttcctgaggag
gtggtacgggagacaggggagtaccgaatgctgcaggcgcagttctcactgctctacaat
gagtctctgcaagtgaagacccagctggacgaggcccgtgggctgctgctggccaccaag
aattcccacctgaggcacattgagcacatggagagtgatgagctggggctgcagaagaag
ctgcgcacagaggttatccagctggaggatacgctggcccaggtacgcaaggagtacgag
atgctgcgcatcgagtttgaacagaacctggcggccaacgagcaggcggggcccatcaac
cgggagatgcgccacctgatcagcagcctccaaaaccacaaccaccagctaaagggggac
gctcagcgatacaagcggaagctgcgggaggtgcaggctgagattgccaagctccgggcc
caggccagtggctctacccactccatccccaccctgggccacccggaggactctggcctg
agtgccccagccccagggaaagaagagggtgggccaggccctgttggtgcccctgacgcc
agaaaggagatggcttcaatgcctggcgctgccattactacctccttggtgaagaaggaa
gacctggtcccttctgaggaagaggcccaggccctgacccccggggcccagggcccctcc
tcccgggcccgagaacctgaggctaaacccaagcgggagcttcgggagcgggaagggcct
gggctgggacccccatctgtagcctcagctctctcaaggactgatcgggagaaggtcaag
gtggaggaggccaagaggaaggagtcagagctcctcaaaggtctccgagcagagctcaag
aaggcccaggaaagtcagaaggagatgaaactgctgctggacatgtataagtctgcaccc
aaggagcagcgggataaggtgcagctcatggcagcggaacgcaaggccaaggctgaggtc
gatgagctacggagccgcatccgggaattagaggagagggatcggagggagagcaagaag
atcgcggatgaggatgccctgcggcgcattcgtcaggcagaggagcagatagaacacctg
caacgcaagttgggtgccaccaagcaggaggaggaggctctgctctcagagatggatgtg
acaggccaggcttttgaggacatgcaggagcagaatgggcggctgctacagcagttgcgg
gaaaaggacgatgccaactttaagctgatgtcagagcggatcaaggccaaccagattcat
aagctactgcgggaggagaaggatgagctgggcgagcaggttcttggcctcaagtcccag
gtggatgcccagctgctgaccgtgcagaagctggaggaaaaagagcgggccttgcagggc
agcctcgggggtgtggagaaggagctgacactgcgcagccaggccctggagctcaacaag
aggaaggctgtggaagcagctcagctggccgaggacctgaaggtacagctggagcacgtg
cagacacggctgcgagagatccagccttgcctggcagagagccgggctgcccgtgagaaa
gagagcttcaacctcaagagggctcaggaggacatctcacggctgcggcgcaagctggag
aagcagaggaaggtggaggtttacgcagatgccgatgaaatcctccaggaggagatcaag
gagtacaaggcgcggttgacctgcccctgctgtaacacccgcaagaaggatgcagttctc
accaagtgcttccacgttttctgcttcgagtgcgtacggggccgctatgaggcccgccag
aggaagtgccccaagtgcaacgcagcctttggtgcccatgacttccaccgtgtctacatc
agctga
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