Phocoena phocoena (harbor porpoise): 136135312
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Entry
136135312 CDS
T11058
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03013
Nucleocytoplasmic transport
pphc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136135312
09122 Translation
03013 Nucleocytoplasmic transport
136135312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136135312
03041 Spliceosome [BR:
pphc03041
]
136135312
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
136135312
Spliceosome [BR:
pphc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136135312
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
136135312
NCBI-ProteinID:
XP_065749284
LinkDB
All DBs
Position
1:complement(79480097..79482199)
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AA seq
626 aa
AA seq
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MSLESSKNRKPKVIRSDGAPAEGKHNRSDTEQEGKYYSEEAEVDLWDPXRDYELYKYTCQ
ELQRLMAEIQDLRSRGDKDAAVEIEDRRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAE
QQVDAYHLQLQNLLYEVMHLQKEVTKCLEFKSNHEEIDLVSLEEFYKEAPPDISKAEVTM
GDPHQQTLAHLDWELERRKRLVEKYQECLSNKEKILKETEVKKEYLSSLQPDLNSIMRAS
LPVXEYLFMPFDQAHKQYETAQHLPPPLYVQATAYGQDKRKEMLKRHPLSVMLDLRCKDD
SVLHLTFYYLMNLNLMTVKAKVTTATELITPISTGDLLSPDSVLSCLYPGDHGKKTPNPA
NQYQFDKVGILTLRDYILDLGHPYLWVQKLGGLHFPKEQPQHTVIADHSLSTSHMETTMK
PLKTRVQSRLALHKWFASLEHGIVPVTNDCQYLFPAKVVSRLVKWVTIAHEDYTELHFTK
DIVEAGLAGDTNLYYMALVERGTAKLQAAVVLNPGYSSIPPIFQLCLNWKGEKTNNNNDN
IRAMESEVNVCYKEVCGPRPRHQLLTNQLQRLCVLLDVYLETEGHDDSVEGPKEFPQEKM
CLRLFRGSSRMKPFKYNHPQGFFSHR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcattggaatcgagcaaaaatcgaaagcccaaagtgatccgaagtgatggagctcca
gctgaagggaagcataatcgttctgacactgaacaggaaggtaaatactacagcgaggag
gctgaggtggacctgtgggaccctngcagagactatgagctgtacaagtacacgtgccag
gagttgcagaggctcatggccgagatccaggacctgaggagcaggggagacaaggatgcg
gcagttgagatcgaagatcggaggatccagagctgtgtgcatttcatgactctaaaaaag
cttaaccgattagcccacatcaggttgaagaaaggaagagatcagactcatgaggccgag
cagcaagtggacgcctatcacctgcagctccagaacctgttgtatgaggtgatgcacctg
cagaaggaggtcaccaaatgtctggagtttaagtcaaatcacgaagaaatcgatctggtc
agcttagaggagttttataaggaggctcctccagatatcagcaaggcggaagtcaccatg
ggagaccctcaccagcaaacccttgcacatctggactgggagctggagcggcggaaaagg
ctggtggagaagtaccaagagtgcctgtccaacaaggagaagatccttaaggagactgaa
gtaaagaaggagtacctgagtagcctccagccggatctcaacagcatcatgcgggcttcc
ctaccagtgtaggagtatctgtttatgcccttcgaccaagctcacaagcagtatgagaca
gcccaacacctacctcctcccctctatgtccaggccactgcgtatgggcaagacaagcgc
aaggagatgctgaagaggcacccgctgtccgtcatgctggacctgaggtgcaaagatgac
agtgtactgcacctgactttctactacctcatgaacctcaacctcatgacggtaaaagcc
aaagtgacaaccgccacagaactgatcacccccatcagtacaggtgacttgctgtctcct
gactcagtcctgagctgtttgtatcctggggatcatggaaagaaaactccaaatccagcc
aatcagtatcagtttgataaagttggcatcctgactttgagggactacatacttgactta
gggcatccctatttgtgggtgcagaagctgggtggcctccacttccccaaagagcagccc
cagcacactgtgatcgctgaccactctctgagcaccagccacatggagaccaccatgaaa
ccgctgaagaccagggtgcagtcccgcctggccctccacaagtggtttgcctccctggaa
cacggcattgtgccagttaccaatgactgccagtacctcttccctgcaaaggttgtctct
cgcctggtgaagtgggtgacgattgcccatgaggattatacagagctgcattttaccaaa
gacatcgtggaggcgggactggctggggacaccaatctctactatatggcacttgtggaa
aggggcacagctaagctccaggctgccgtggtgctgaaccccggctactcctccatccca
cccattttccagctctgtctgaactggaaaggggagaaaaccaacaacaacaacgacaat
attcgggccatggagagtgaggtcaatgtgtgctacaaggaggtgtgcggcccccggccc
cgccaccagctcttgacgaaccagctgcagcgtctgtgtgtgctgctggacgtctacctg
gagacggagggccacgatgacagcgtggaggggcccaaggaatttccccaggagaaaatg
tgtctgcggcttttcaggggctccagcaggatgaagccgtttaaatataaccatcctcaa
ggattcttcagccatcgctga
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