Phocoena phocoena (harbor porpoise): 136135419
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Entry
136135419 CDS
T11058
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
pphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136135419 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
136135419 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136135419 (PABPC1L)
03041 Spliceosome [BR:
pphc03041
]
136135419 (PABPC1L)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136135419 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
136135419 (PABPC1L)
Spliceosome [BR:
pphc03041
]
Complex C
Other components
Complex C specific factors
136135419 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
136135419
NCBI-ProteinID:
XP_065749369
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All DBs
Position
15:72421680..72443941
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AA seq
612 aa
AA seq
DB search
MNSSGPGYPLASLYAGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKPRRERD
AELGARAMEFTNIYVKNLHVDVDEQCLQDLFSQFGKILSVKVMRDDGGHSRGFGFVNFET
HEEAQKAVMDMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRALGSPLLGSFQQPASYFLPATPQPPAQAPY
YGSGPPVQPAPRWTAQLPRPSSAYPPAASVVQPAAVSRRPSFPIGSARQISTHVPRLVPH
AQGVANIGTQTTGPGMAGCSSPRGPLLTHRGSLATHNTHRVQEPAVRVPGQEPLTASMLA
AAPLREQKHMIGERLYPLIYNVHTQLAGKITGMLLEIDNSELLLLLESPESLNAKVEEAL
AVLQDHQATEQT
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaactccagcggcccgggttacccgctcgcctcgctctacgcgggcgacctgcacccc
gacgtgactgaggccatgctctacgagaagttctcgcccgctggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggctacgcctacatcaacttccag
cagccggccgacgcggagcgggcactggacacaatgaactttgaggtgatcaaaggccag
cccatccgcatcatgtggtcccaacgagacccaggacttcgcaagtcgggtgtcggcaac
atcttcatcaagaacctggaagactccattgacaacaaggccttgtatgacaccttctcc
acctttgggaacatcctctcttgcaaggtggtgtgtgatgatcatggctcccgaggcttt
ggctttgtgcattttgagacccacgaggctgcacagaacgccatcagcaccatgaatggg
atgctgctgaatgaccgcaaagtcttcgttggccacttcaagccccgacgggagcgggat
gcagagctgggagctcgggccatggagttcaccaatatctacgtgaagaacctccacgtg
gacgtggatgagcagtgcctgcaggacctcttctcccagtttgggaagatactgagtgtc
aaggtgatgagggatgacggcggccactcccgcggctttggctttgtcaactttgagacg
catgaggaagcccagaaggctgtgatggacatgaacgggagggaggtgagtggacggctg
ctctacgtaggccgggcccagaagcgggtggagcggcagaatgagctgaagcgcaggttc
gagcagatgaagcaggaccggctgacccgttaccagggtgtgaacctgtatgtgaagaac
ttggatgactccatcgatgatgagaaactgaggaaagagttctctccctatggagtgatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtgtgtttt
tcctctccagaagaggcgacgaaggctgtgacagagatgaacgggcgcatcgtggggacc
aagccactgtacgtggcactggcccagcgcaaggaggagcggaaggccatcctgaccaac
cagtacatgcagcgcctctccaccatgcgggccctgggcagccccctcctgggctccttc
cagcagcctgccagctacttcctgcccgctacgccccagcctccagcccaggccccatac
tatggctctggcccacctgtccagcctgcccccaggtggacggcccagctacccagaccc
tcgtccgcctacccgcctgcggcctcggttgtccagccagcagccgtgtctcggcgcccc
tcgttccccatcggcagtgccaggcagatctccacccacgtgccgcgcctggtgccccac
gcccagggagtggccaacatcggtacccagaccacaggacccggtatggcaggatgctct
tcaccaagggggcctctcctgacacacagaggttccttggcaacacacaacacccaccgg
gtccaggagcctgctgtgcgtgtccccggacaggagcccctgactgcgtccatgctggcc
gcagcgccgctgcgcgagcagaagcacatgatcggtgagcgtctctaccccctcatctac
aacgtccacacccagctggctggcaagatcaccggcatgctgctggagatcgacaactcg
gagctgctgctcctgctggagtccccagagtccctcaacgccaaggtcgaagaggctctg
gcggtgttgcaggaccaccaggccacggagcagacctga
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