Phocoena phocoena (harbor porpoise): 136135454
Help
Entry
136135454 CDS
T11058
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
136135454 (COL20A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Laminin_G_2
DUF4959
Motif
Other DBs
NCBI-GeneID:
136135454
NCBI-ProteinID:
XP_065749399
LinkDB
All DBs
Position
15:87055807..87082738
Genome browser
AA seq
1304 aa
AA seq
DB search
MPDKSRGRDAEGAVGRRRAADLLIQEAPPGLWDAGPWGQEGQWLEASGPHTMSIRVCPRL
GVGLWLWLGVTLGLGQGQASGRLRLVVLPEDRLQMKWRESEGSSLGYLVQVKPRAGDLEQ
EVMLTTKTPKATVGGLSPSKGYTLQIFELTGSGNVLLAQREFVIKDLKSSSASRSSRRPL
GAALQPSPSHEGSPDLDPPVALAPSQDLPTPAGPQFRCMSPTPVDMIFLVDGSWSIGHSH
FQQVKDFLASIIEPFEIGPDKVQVGLTQYSGDPQTEWDLNAFGTKEEVLAAVRGLQYRGG
NTFTGLALTHVLEQNLKPVAGLRPEAAKLVILVTDGKSQDDARTAGHVLKDLGVDVFAVG
VKNADDAELRLLASQPLDITVHSVQDFRQLGSLAGLLSRLVCQKVQGRRLRSGPAAAAPA
LDPLSAPTGLVLTRVTSSSIHLSWTPAPRPPLKYLIVLRPSKGGAPREVVVEAPASSAEL
HNPTSSTEYLVSVLPVYEAGVGAGLQGPVTTAPLPPPQALTLAAVMPRAIHLTWQPSAGA
TQYLVQCSPTSPKGKEEGREVRVGQPEALLDGLAPGRDYEVWVRSLRGAETSEAQSIRAR
TPALAPPRHLSFSDVSHDSARVSWEGTARPVRLFRVSYVSSKGGHSGQTEAPGSATSVTL
GPLSSSTVYTVRVTCLYPGGSSSTLTGRLTTRKVPSPSQLSVIELPGDEVQLEWAAAAAS
GVLVYQITWTPLGEGKAHKISVPGNLGTAVLPGLGRHSEYEITILAYYRDGARSDPVSLR
YTPRSPPSNLALASESPDSLRVSWTPPSGRVLHYQLSYALASGSGPEKSISIPGPRSHVT
LPELLAATKYRVLVSAVYGAGKSVAVSATGRTACPALHPDGSSPGFDLMAAFGLVEKEYA
SIRGVAMEPSAFGPIRTFTLFKDAQLTRRASDIHLATLPTEHTVVFLLRLLPETPHEVFA
LWQVAAEDFQPVLGVLLDASRKSLTYFRRDPSATLQEATFDLPEVRRIFFGSFHKVHIAV
GRSKVRLYVDCRKVAEKPTGEAGSLPTTGFVTLGRLAKARGPRSSSASFQLQMLQIVCSD
SWAEEDRCCELPASKDGETCPAFPSACACSSQTPGPPGPQGPPGHPGRDGAPGEQGFPGP
RGPPGVKGEKGDHGRPGLQGHPSLQGTPGKVGVQGPKGMRGLEGTAGLPGPPGPRGFQGT
AGARGSSGERGPPGAVGPTGLPGPKGERGEKGEPQSLATIYQLVGQASHLLKLHACTHES
TRPPMPILEAPRVFGRRREARLPGEGGHGGPRPEDRGPTFPRSA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaagtcccgagggcgggatgcagagggtgcggtgggcagacggagggcagct
gacctcctgatccaggaagctcccccaggcctgtgggacgctggcccctggggacaggag
ggccagtggctggaggcctccgggccacacaccatgagcatccgtgtgtgcccccgcctc
ggggtcggcctctggctgtggctgggtgtcaccctgggactcggccagggacaagcaagc
ggccgcctgaggctggtggtgctgcctgaggaccggctgcagatgaagtggagggagtcg
gaggggagcagcctcggctacctggtgcaggtgaagcccagggcaggggacctggagcag
gaggtgatgctgactaccaagacccccaaggccacggtggggggcctgagcccctccaaa
gggtacaccttgcagatcttcgagctcacgggctcagggaatgtcctgctggctcagagg
gagtttgtgatcaaagatttgaagagtagctctgctagcaggagcagccggaggccactg
ggggcagccctgcagcccagcccctcccacgaggggagcccagacctcgatcccccagtg
gccttggccccaagccaagacctgcccacgcctgccggaccccagttccgctgcatgtcc
cccacacccgtggatatgatcttcctggtggatggatcctggagtattggtcacagtcac
ttccagcaggtcaaagacttcctggccagcatcattgagccctttgaaatcgggccagac
aaagtccaagtaggcctgactcagtacagcggggatccccagaccgagtgggacctgaat
gcctttggcaccaaggaggaggtgctggccgccgtgcgtggcctccagtacagaggggga
aacacgttcacaggcctggccctgacccacgtgctggaacagaacctgaagcccgtggcg
ggtctccgtccggaggcggccaagctggtgattctggtgacggacggcaagtcccaggac
gacgcccgcactgctggccatgtgctcaaggatctgggcgtcgacgtctttgccgtgggc
gtgaagaacgccgatgatgccgagctgaggctcctggcgtcccagcctctggacatcacc
gtgcacagcgtgcaggacttccgccagctcggctcgctggccggcctgctcagccgcctc
gtctgccagaaggtgcagggcaggcgcctgcgcagcggcccagccgcagccgctccggcc
ctggaccccctttccgctcccaccggcctggtcctgacccgggtgacctcctccagcatc
cacctgtcctggaccccagccccgcggccacccctcaagtacctgatcgtgttgcggcct
tctaagggcggcgcccccagggaggtggtggtggaggcgcccgcctcgtcggcagagctg
cacaacccgacctccagcacggagtacctggtctccgtgctccccgtctacgaggccggc
gtcggtgcgggcctgcagggcccggtgaccacagcgcccctgcccccaccccaggcactg
accctggccgcagtgatgcccagagccatccacctcacctggcagccctcggcaggggcc
acccagtacctggtgcagtgctcgcccacctcccccaagggcaaggaggaggggagagag
gtgcgggtggggcagccggaggcgctgctggatgggctggccccaggcagggactacgag
gtgtgggtgcggagcctgcgaggggcagagaccagcgaggcccagagcatccgcgccagg
acccccgccctggccccccccagacacctgagcttctcggacgtgagccatgactcggcc
cgagtgtcctgggagggcaccgcgaggcccgtgcgcctgttcagggtcagctacgtctcg
agcaagggcggccactcgggacagacggaggctcctgggagcgccacctcggtcactctg
ggccccctctcgtcctccaccgtctacacggtccgcgtcacctgcctctaccctgggggc
agctcctccacactaactggccgcctgaccacacggaaagtccccagcccgagccagctg
tcggtgatagagctgcctggggacgaagtccagctggagtgggcggccgcagcggcgtcc
ggcgtgcttgtctaccagatcacgtggacgcccctgggagaggggaaggcccataagatc
tccgtcccggggaacctgggcacggccgtcctgcctggcctggggaggcactcggagtat
gagatcaccatcctggcctactacagggatggggcccgcagtgaccccgtgtccctccgc
tacaccccccgtagcccaccctccaacctggccctggcctcagagtctcccgacagcctg
cgggtcagctggacgcccccgagtggccgtgtcctccactaccagctctcctatgcactg
gcctcaggctcgggacccgagaagtcgatctccattccaggacccagaagccatgtgact
ctccctgaactgctggcggccaccaagtaccgggtcctagtctcagccgtctatggagca
gggaagagtgtggcagtgtctgccacgggccggacggcctgcccggccctccacccggat
ggctcctccccaggctttgacctgatggcagccttcgggctggtggagaaggaatacgcc
tccatccgtggcgtggccatggagccctcggcctttggccccatcaggaccttcacgctc
ttcaaggatgctcagctgacccgccgggccagcgacatccacctggccaccctccccacg
gaacacacagtcgtcttcctcctgcgcctgctccccgagacgccccacgaggtcttcgcg
ctgtggcaggtggcggccgaagacttccagcccgtcctgggggtcctgctggacgccagc
agaaagtcgctgacctacttccgccgtgaccccagcgccaccctgcaggaggccaccttc
gacctgcccgaagtgaggaggatattctttgggagcttccacaaggtgcacatagccgtg
ggccgctccaaggtcaggctctacgtggactgccggaaggtggctgagaagcccactggg
gaggccggcagcctgcccaccaccggcttcgtcacactggggagactggccaaggcccgg
ggcccccggagcagctcagcctcgttccagctccagatgctacagattgtgtgcagtgac
tcctgggcagaggaggacaggtgctgcgagctcccggcttcgaaggatggagagacctgc
cctgccttcccttctgcctgtgcatgttcctcgcagacccctgggcccccgggcccccaa
ggacctcctggccaccctgggagggacggagccccaggagagcagggcttcccagggccc
aggggtccaccaggggtcaaaggagagaagggggaccatggacgccccggcttgcagggc
caccccagcctccagggcacccctgggaaggttggcgtccagggaccaaagggaatgaga
ggcctggaggggactgctggcctgcccggaccccctggccctaggggcttccagggcacg
gcgggggccagaggcagcagcggggagcgaggacccccgggggctgtggggcccacgggg
ctgccggggcccaagggggagcgaggagagaagggcgagccacagtccttggccaccatc
taccagctcgtgggccaggcctcgcacctgctgaagctccacgcctgcacccacgagagc
acccggccccccatgcccatcttggaggcccccagggtcttcggcaggcgcagagaggcc
cggctccctggagaaggggggcacggtggcccccgcccagaggacagaggacccaccttc
cccaggtcagcatag
DBGET
integrated database retrieval system
