Phocoena phocoena (harbor porpoise): 136135565
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Entry
136135565 CDS
T11058
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03430
Mismatch repair
pphc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136135565 (PMS2)
03460 Fanconi anemia pathway
136135565 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136135565 (PMS2)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
136135565 (PMS2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
UfSP_MPN_N
Motif
Other DBs
NCBI-GeneID:
136135565
NCBI-ProteinID:
XP_065749530
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Position
15:4912216..4936753
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AA seq
873 aa
AA seq
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MERADVPSSELAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDASATNIELRLKD
YGAELIEVSDNGCGVEEENFEGLALLSTSLSALKHHTSKIQEFADLTQVETFGFRGEALS
SLCALSDVTISTCHTSAKVGTRLVFDHNGKILQKTPYPRPRGTTVSVQQLFYTLPVRHKE
FQRNIKKEFSKMVQVLHAYCIISAGVRVSCTNQVGQGKRQPVVCTSGGSSMKENIGSVFG
QKQLQSLIPFVQLPPSDTVREEYGLSSSQALHNLFCISGFISHCAHGVGRSSTDRQFFFI
NRRPCDPAKVSRLVNEVYHMYNRHQYPFVVLNISVDLECVDINVTPDKRQILLQEEKLLL
AVLKTSLIGMFDSDVNKLNVSQQPLFDVEGHLIKRHSAEVEKPVPEKQGDPAPLRTRGEE
KRAVTISRLREAFSLRHTVENRSRGPKATDPRRISPRQKSSTPLPSASGPLCSWKHISEP
REEGVTSTQEPCDPMGRVDTEEGWGHSSASAGSEEGSSTPKTGSQPSSDHVASSPKDGFS
QENVESLEKLPETDHRLSGTNCHLDHEESDSRARVSLQPTHLSSPNAKRFRKEGVPLNPD
VPPESMKTRNASVSEVDVAVEINKKIVPLDFSMSSLAKRIKQLCQQEQQQEGGQNYRKFR
AKICPGENQAAEDELRKEISKTMFAEMEIIGQFNLGFIITKLNADIFIVDQHATDEKYNF
EMLQQDTVLQGQRLIAPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLIS
LPTSKSWTFGPQDIDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKK
LITHMGEMDHPWNCPHGRPTMRHIANLDIISQN
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggagcgagccgacgtgccgagttcagaacttgctaaggccatcaaacctatcgatcgg
aagtcagtccatcagatttgttctgggcaagtggttcttagtctaagcactgccgtgaag
gagttggtagaaaatagtgtcgatgccagtgccactaacattgagctcaggcttaaagac
tatggggcggagctcattgaagtttcagacaatggatgcggggtagaagaagaaaacttt
gaaggcttggccttactctccacctctctttcagctctgaagcatcacacttctaagatt
caggagtttgccgacctcactcaggttgaaacttttggctttcggggggaagctctgagc
tcactctgtgcactgagtgatgtaactatttctacctgccacacatctgcgaaggttggg
actcgactggtgtttgatcacaatggaaaaatcctccagaaaaccccctacccacgaccc
agagggacgacagtcagcgtgcagcagttattttatacgctacctgtgcgccataaggag
tttcaaaggaatattaaaaaggagttctccaaaatggtccaggtcttacacgcctactgt
atcatttcagcgggcgtccgtgtaagttgcaccaatcaggttggacagggtaagaggcag
cccgtggtgtgcaccagtggaggctccagcatgaaggaaaatatcggatctgtatttggg
cagaaacagttgcaaagcctcatcccttttgtgcagctgccccctagtgacactgtccgt
gaagaatacgggctgagctcttcccaggctctgcataacctgttttgtatctcaggtttt
atttctcactgtgctcacggcgtgggaaggagttcaacggacagacagtttttctttatc
aatcggcggccttgtgacccagcaaaggtttccagacttgtgaatgaggtctatcacatg
tataaccggcatcagtatccatttgttgttcttaacatttctgttgatttggaatgtgtc
gacatcaacgttactccagataaaaggcaaattttactacaggaggagaagcttttgttg
gcagttttaaagacgtctttgataggaatgttcgatagtgatgttaacaaactcaacgtc
agtcagcagccgctgtttgacgtcgaaggtcacttaatcaaaaggcattcggcagaggtg
gagaagcccgtgccagagaagcagggtgatcccgccccgttaaggactcgtggggaagag
aaaagggcagtgaccatttccagactgagagaggccttttcccttcgtcacacagtggag
aacaggtctcggggtccgaaggccaccgacccaagacggatttctccacgacagaaaagc
agcaccccacttcctagcgcttcagggcccctctgctcctggaagcacatctctgaacct
cgggaggaaggggtgacttccactcaggagccctgtgacccgatgggcagagtggacacg
gaggagggctgggggcacagcagcgcatctgccggctctgaggaggggtccagcacccca
aaaacgggcagccagcccagcagcgaccacgtggcaagctcccccaaagatgggttttcg
caagaaaatgtggagtctttggagaagttacctgaaacggaccatcgtctttcgggcacg
aattgccacttagaccacgaagaaagcgactcacgagctagagtttcgctgcagccaact
catctctcatccccaaacgcaaagcgttttcgaaaagaaggggttcctttaaatcccgat
gtccctccagagtccatgaaaacccggaacgcctcagtgtccgaggtggatgtagctgtt
gaaattaacaagaaaatagtgccccttgacttttctatgagctctttagccaaacgaata
aagcagttatgtcagcaagaacagcaacaagaaggtggacaaaattataggaagtttcgg
gcaaagatttgccctggagaaaatcaagcagcagaagatgaactaagaaaagagataagc
aagacgatgtttgcagaaatggaaatcattggtcagtttaacttgggatttatcatcacc
aaactgaatgcagatatcttcatagtggaccagcatgccacggatgagaaatacaacttc
gagatgcttcagcaggacacagttctccaggggcaaaggctcatagcaccacagactctc
aacttaacagctgtcaatgaagcagttctaatagaaaatctggaaatattcagaaagaat
ggctttgactttgttatcgatgaaaacgcgccggtcactgaaagagctaaattgatttcc
ttgccaactagtaaaagctggacctttgggccccaggacatagatgaactgatcttcatg
ctgagcgacagccccggtgtcatgtgccggccttcccgggtcaggcagatgtttgcctcc
agggcctgtcggaagtctgtgatgattggaactgctcttaacacaagtgagatgaagaaa
ctcatcacccacatgggggagatggaccatccctggaactgtccccacggaaggcccacc
atgagacacattgccaatctggacatcatttctcaaaactga
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