Phocoena phocoena (harbor porpoise): 136135702
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Entry
136135702 CDS
T11058
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
Spliceosome [BR:
pphc03041
]
Common components
Common spliceosomal components
General mRNP proteins
136135702 (RBM39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
136135702
NCBI-ProteinID:
XP_065749704
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Position
15:complement(64437087..64467081)
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AA seq
530 aa
AA seq
DB search
MADDIDIEAMLEAPYKKVRKNKSDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKE
RKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGL
PHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFS
TVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR
AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG
FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTT
GRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQP
LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggctccttacaagaaggtgagaaaa
aacaagtcggatgagaacaagttgagcagtgccaacggccatgaagaacgtagcaaaaag
aggaaaaaaagcaagagcagaagtcgtagtcatgaacgaaaaagaagcaaaagtaaggaa
cggaagcgaagtagagatagagaaaggaaaaagagcaaaagccgtgaaaggaagcggagt
agaagcaaagaaaggagacggagccgttcaagaagtcgagatcgcagattcagaggccgt
tacagaagtccttactccggaccaaaatttaacagtgccatccgaggaaagattgggttg
cctcatagcatcaaattaagcaggcgacgctcccgaagcaaaagtccattcagaaaagac
aagagcccagtgagggagcctattgataatctgactcctgaggaaagagatgcaaggacc
gttttctgcatgcagctggcagcaagaattcggccaagggatttggaagagtttttctcc
acagtaggaaaggttcgagatgtgaggatgatttctgatagaaattcaagacgttccaaa
ggaattgcttatgtggaatttgttgatgttagctcagtgcctctagcaataggattaact
ggccagcgggttttaggagtgccaatcatagtacaagcgtcacaggcagaaaaaaacaga
gctgcagcaatggcaaacaatctacagaagggaagtgctggacctatgaggctctatgtg
ggctcgttacattttaacataactgaagatatgcttcgggggatctttgagccttttgga
aggattgaaagtatccagctcatgatggatagtgaaacaggtcgatccaaggggtatgga
tttattacgttttctgattcagaatgtgccaagaaagctttggaacaacttaatggattt
gagctagcaggaaggccgatgaaagttggtcatgttactgaacgtactgatgcttccagt
gctagctcatttttggacagtgatgaactggaaaggactggaattgacttgggaacaact
ggtcgtctccagttaatggctaggctcgcagagggtacaggcttgcagatcccaccagca
gcacagcaggctttgcaaatgagtggctctctggcatttggtgctgtggcagatttgcaa
acaagactttcccaacagactgaagcttcagcattagctgcagctgcctctgttcaacct
cttgcaacacagtgtttccaactctctaacatgtttaaccctcaaacagaagaagaagtt
ggatgggatacagagattaaagatgatgtgattgaagaatgtaataaacatggaggagtt
attcatatttatgttgacaaaaattcagctcagggcaatgtgtatgtgaagtgcccatca
attgctgcagccattgctgctgtcaatgcattgcatggcaggtggtttgctggtaaaatg
ataacagcagcgtatgtacctcttccaacttaccacaacctctttcctgattccatgaca
gcaacacaactactggttccaagtagacgatga
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