Phocoena phocoena (harbor porpoise): 136135706
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Entry
136135706 CDS
T11058
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pphc01002
]
136135706 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pphc04121
]
136135706 (USP42)
Enzymes [BR:
pphc01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
136135706 (USP42)
Peptidases and inhibitors [BR:
pphc01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
136135706 (USP42)
Ubiquitin system [BR:
pphc04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
136135706 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
136135706
NCBI-ProteinID:
XP_065749709
LinkDB
All DBs
Position
15:complement(4823202..4854206)
Genome browser
AA seq
1323 aa
AA seq
DB search
MTTGDKASESSDPSTCQNQPGSSEAVSPGDMEAGSASWGTVSSLNDVSSHALSLGPVPGA
VVYSSSPVPEKSKPSPPKDQALGDGIAPPEKILFPSEKICLKWQQTHRVGAGLQNLGNTC
FANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQVLNHPGDVIKPMFVI
NEMRRIARHFRFGSQEDAHEFLQHTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRS
RVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKCKNMVPA
SKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYDLYAVL
VHTGFNCHAGHYFCYIKASNDLWYQMNDSIVSISDIRSVLSQQAYVLFYIRSHDVKIGGE
LTHSAHSPGQSSPQPVISQRVVSNTQAASGFIGPQLPSHMMKNPPHLNGTGPLKEMPSSS
MASPNGNSSVSRTGPVNASTSVQDWPVNRPSVIPEHPKKQKITISIHSKLPVQKMPSQPT
LHSSSSESPNKPAPSSTITTSTAIQSTSSAPMMPASSKVTKQITLRESCPEPVTNGRSKL
SSGVLVPYGAESSEESDEEAKGLGKENSLRPAESARAPAPVAEDVGASPHELREPVALNG
ATSTDSDPKENSLPSGAASCQVQPALHSENPFSKANSLPGKLMPAPLPLLPEDRILETFK
LGSKGKGSTDEMSTTGTEERPPQDPEAELEAGSSAPDSCENLELVMSLSSKFKKVLSPSD
ASIKPTKEEVSENLLAKPEEALPSINTFCNTNKDTLGDDQLPKPCDPGNLTNDQSKPSQD
VKGTSPERPQDPVAAEAAGRLSPSPLSGTEGDCEPEPLGHSSRDRGTDVEGPPKSTGVSA
DGVPSPQLDRIAENRPEGVPEQSNGERGEDSKAGQKVQEACAVPEKTSSLRKVDRGHYRS
RKDRSSSGEHARDSRSGTEEQPRRKRPHHEWKRCRSERPEPCAAAPHAPCPGSLARSGHP
RSRSMGAPDQEWGRYHHAEAEHAWARENYPDGMRWGRFRYHHDRYASYPAREPWEWRPLH
GEREYDRAGPYSGRPHKDHYRGRKGHEPAAKERDRHRVSSPGAGPAHTPPPHPADKYAHD
KAALGAEDRGCDLAGQFHEHKNVKSRKRRYSSVGDKDSHVEKKAWRSLQKDPLEEPKVKK
HKKSKKKKSKDKHRERNSRRQQYSDLLVTHSDADLHNRHKKKKKKKKKKKHSKSENSLRD
SEPLLPEATSCETVDHFQGADSAFPLTASQPLDGVGPCPEKTKHFWMETRDDRCHLSKCG
QGD
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaggtgacaaagcttcagaatcttcagacccatcaacctgtcagaaccagcct
ggcagttctgaggcagtctcacctggagacatggaggcaggttctgccagctggggtact
gtgtcttcattaaatgatgtttcaagtcacgcgctttctttaggaccagtacctggtgct
gtagtttattcaagttcacctgtacctgaaaaatcaaaaccatcaccaccaaaggatcaa
gctctaggtgatggcattgctcctccagaaaaaattcttttcccatctgagaagatttgt
cttaagtggcagcaaactcatagagtaggagctgggctccagaatttgggcaatacctgt
tttgccaacgcagcgctgcagtgtttaacttatacaccaccacttgccaactacatgcta
tcacacgaacactccaagacatgtcatgcagaaggattttgtatgatgtgtacaatgcag
gctcatatcacacaagtgctgaaccatcctggggatgttattaaaccgatgtttgtcatt
aatgagatgcggcgcatagctaggcacttccgctttggaagccaagaagatgcccatgaa
ttcctccagcacactgttgatgctatgcaaaaagcatgcttgaatggcagcaacaaatta
gacagacacacccaggctaccacactcgtttgccagatatttggaggatacctaaggtct
agagtcaaatgtttaaattgcaaaggtgtgtcagatacttttgatccatatctcgacata
acattggaaataaaggctgctcagagtgttaataaggcattggagcagtttgtgaagccg
gaacagctcgatggagaaaactcgtacaagtgcagcaagtgtaaaaatatggttccagct
tcgaagaggttcactatacacagatcttctaacgttcttacactttctctgaaacgtttt
gcaaattttactggtggaaaaattgctaaggatgtgaaataccctgagtatcttgatatt
cgaccgtatatgtctcagccgaacggagaaccgatcatttatgatttgtatgcggtactg
gtgcacactggcttcaactgccacgccggccattacttctgctacataaaagctagcaat
gacctctggtaccaaatgaatgactccatcgtatctatcagtgatattagatcagtactc
agtcaacaagcttatgttctcttttatatcaggtcccacgatgtgaaaataggaggtgaa
ctcactcattccgcccatagccctggccagtcctctccccaaccggtgatcagccagcgg
gttgtcagcaacacacaggcagcatccgggtttatcggaccacagcttccttctcacatg
atgaagaacccacctcatctaaacgggacaggacccttgaaggaaatgccgagcagctcc
atggcaagtcctaacgggaattccagtgtcagtaggactggccctgtcaacgcctcaaca
tctgttcaggactggccggttaacaggccctcagttattccagaacatcccaagaaacag
aaaatcacgatcagtattcacagcaagttacctgtgcagaaaatgccgtcacagcctact
cttcacagcagctcttcagagagcccgaacaagcctgccccctcatctaccattacgact
tctactgcaatacagtctacctcgagtgcccccatgatgcccgcgtctagtaaggtaacg
aagcagatcaccctgagggagtcctgccctgagcctgtgacgaacggcaggtccaagctg
agctccggcgtgctggtcccctatggcgccgagtcgtctgaagagtccgacgaggaggcg
aagggcctcggcaaggagaacagtctccgtcccgccgagagcgcgcgcgcccctgctccg
gttgccgaagatgtcggggcctctccgcacgagctccgagagcccgtggctctaaatggt
gctaccagtacggacagtgacccgaaagaaaacagcctaccctcgggtgctgccagctgc
caagtccagcctgccctacactcagaaaaccccttttctaaggcaaacagtctccctggg
aagttgatgcctgctcctttgccacttctcccagaagacagaatcttagagaccttcaaa
ctcggcagcaaagggaaaggctccacagatgagatgagtacaactgggacagaggagagg
cctccgcaggaccctgaggctgagctggaggctggcagctccgctcccgattcctgtgag
aacctagagctggtcatgagcctcagcagcaaattcaagaaggttttgtcgccctcagac
gccagcatcaaacctaccaaagaagaagtctctgaaaaccttttggcaaaacccgaggag
gctttgcccagtatcaacaccttttgtaacaccaacaaggataccctcggggatgatcag
cttcctaaaccgtgtgacccagggaatttaacaaacgatcagagcaaaccgtcccaggac
gtgaaagggacgtcaccagagcgtccccaggacccggtggcagcagaagccgcggggagg
ctgagcccgagtcccttgtcaggtaccgagggcgactgtgagcctgagcccttgggtcac
agcagtcgggacagaggcacggatgtggagggtccccctaaaagcacaggggtgtccgca
gatggggtgccctctccgcaattagacaggatcgcagaaaaccgtccagagggggtcccc
gagcagagtaacggtgagagaggtgaagacagtaaggccgggcagaaggtccaggaggct
tgtgcagtgccggaaaaaaccagcagcctcagaaaggttgaccgaggacattaccgcagc
cgcaaagaccgatcgtccagcggcgagcacgcgcgggacagcaggagcgggacggaggag
cagcctcgccggaagcggccccaccatgagtggaagcggtgccggtccgagcggcccgag
ccctgcgccgcggccccgcacgccccctgccccggatccctggccaggtccggccacccg
cgctcccggagcatgggggcccccgaccaggagtggggccgctaccaccatgctgaggcc
gagcacgcctgggcccgggagaactacccggacgggatgcgctgggggcggttcaggtac
caccacgacaggtacgcctcgtacccggcccgcgagccgtgggagtggaggcccctccac
ggcgagcgagagtacgaccgagccgggccctacagcggccggccccacaaggaccactac
agaggccggaagggccacgagccggcggccaaagagagggaccggcaccgcgtcagcagc
cccggggcgggcccggcccacacgccccctccgcaccctgctgacaagtacgcccacgac
aaggctgcactgggggctgaagacagaggctgtgacctcgccggtcagtttcatgaacac
aaaaacgtcaagtcacgaaaacggaggtacagtagtgtaggggataaagacagccatgta
gaaaagaaagcctggagaagcttacaaaaggatcctttagaggagcctaaagtgaagaag
cacaaaaaatcaaagaaaaagaaatccaaggacaaacaccgagagcggaattccaggcgt
cagcagtactcagaccttttggtaacgcactctgatgccgacctgcacaacagacacaag
aagaaaaagaagaagaagaaaaagaagaagcactcaaaatcagagaactcgcttagagat
tcagagccactcttgcccgaggccaccagctgtgagactgtggaccatttccagggagcg
gacagcgctttccccctcacggccagccagcctctggatggtgtgggaccttgccctgag
aaaacaaaacatttctggatggaaacgagggatgacaggtgtcatctgtctaagtgtggc
cagggtgattga
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