Phocoena phocoena (harbor porpoise): 136136649
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Entry
136136649 CDS
T11058
Symbol
LDB3
Name
(RefSeq) LIM domain-binding protein 3 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
136136649 (LDB3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pphc04990
]
136136649 (LDB3)
Domain-containing proteins not elsewhere classified [BR:
pphc04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
136136649 (LDB3)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
PDZ_2
LIM_FHL2-3_N
DUF3854
Motif
Other DBs
NCBI-GeneID:
136136649
NCBI-ProteinID:
XP_065750947
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All DBs
Position
16:complement(48523417..48579316)
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AA seq
721 aa
AA seq
DB search
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSPGDLVVAIDGVNTDTM
THLEAQNKIKSASYNLSLTLQKSKRPILISTTAPPIQSPLPVIPHQKDPALDTNSSLAAP
SPNPKARAIPGTPGNLEFGQTLSSSFSQTSVFSSHTEASDAGPPWGSPGAKVNLEGTLDS
LSPKAPRGSSQPRQYNNPVGLYSAETLREMAQMYQMSLRGKASGAGLLGGADYQERFNPS
ALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSL
PVKDLTVDSTSPVYQAVIKNQNKPEDEADDWARRSSSLQSRSFRILAQMTGTEYMQDPDE
EALRRSRPQASAYSPAVATSPAPAAHTYSEAPAAPAPKPRVVTTASIRPSVYQPVPASTY
SPSPGANYSPAPYTSSPAPAYTPSPAPAYSPSPAPAYTPSPAPSYNPAPYSGGPAESASR
PPWVTDDSFSQKFAPGKSTTTVSKQGLPRGAPAYNAPPAPQVSPLARGTVQRAERFPASS
RTPLCGHCNSIIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFF
APVCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFS
TKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAIN
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacagcgtgaccctgaccgggcctgggccctggggcttccgtctgcaggggggc
aaggacttcaacatgccactcaccatatcccggatcacaccgggcagcaaggccgcccag
tcccagctcagcccgggtgaccttgtggtggccattgacggcgtcaacacagataccatg
acccacctggaggcccagaacaagatcaagtctgccagctacaacctgagtctcacactg
cagaagtcaaagcgtcccattctcatctccacgacagcgcccccgatccagtcccctctg
cctgtgatcccccaccaaaaggaccctgctctggacacgaacagcagcctggcagcaccc
agccccaaccccaaggcgagggccatcccgggcaccccaggcaacctggagttcgggcag
acccttagctcctccttctctcagacctccgtcttctcctcacacacggaggcctctgac
gctggccctccatggggcagcccgggggccaaggtcaacctggaggggaccctcgactct
ctaagcccgaaagccccgcggggttcgagccagccaaggcagtataacaaccccgttggc
ctgtactcggcagagaccctgagggagatggctcagatgtatcagatgagcctccgaggg
aaggcctcaggtgctggactcctaggaggcgccgactaccaggaacgcttcaaccccagc
gccctgaaggactcggccctgtcgacccacaagcccatcgaggtgaaggggctgggcggc
aaggccaccatcatccacgcgcagtacaacacgcccatcagcatgtactcccaggacgcc
atcatggacgccatcgccgggcaggcccaggcccagggcagtgacttcagtgggagcctt
cctgtcaaagacctcaccgtagacagcacctctcccgtgtatcaggctgtgattaagaac
cagaacaagccggaagacgaggctgacgactgggcccgccgctcctccagcctgcagtct
cgctccttccgcatcctggcccagatgacggggacagaatatatgcaagaccctgatgaa
gaagctttgcgaaggtcaaggccccaggcctctgcctacagtcccgctgtggccacctct
ccagcacctgccgcccatacatacagcgaggccccagctgcccctgcacccaagccccgg
gttgtcaccactgccagtatccggccttctgtctaccagccagtgcctgcatctacctac
agcccatccccaggggccaattacagtccagccccctacacctcctcccctgcccccgcc
tacaccccttcccctgcccccgcctactccccctccccagcaccagcctacaccccctcg
ccagccccaagctataatcctgcaccctacagcgggggccctgcggagtctgccagccgt
cccccatgggtgacagacgacagcttctctcagaagttcgcccctggcaagagcaccacc
actgtcagcaagcaaggcctgccccgaggggcccctgcctacaacgcaccaccggctccg
caggtgtccccccttgccaggggtaccgtgcagagggcggagcgcttcccagccagcagc
aggactccgctctgcggccactgcaacagcatcatccggggcccctttctggtagccatg
ggccgctcctggcacccagaagagttcaactgtgcctactgcaagacctccctggcagac
gtgtgctttgtggaggagcagaacaacgtttactgtgagcggtgttatgagcagttcttt
gccccggtctgtgccaagtgcaacaccaaaatcatgggggaagtgatgcatgccttgaga
cagacgtggcacaccacctgctttgtctgtgcagcctgcaagaagcccttcgggaacagc
ctcttccacatggaagatggggagccctactgtgagaaagactacatcaacctgttcagc
accaagtgtcacggttgcgatttccccgtggaggccggtgacaagtttatcgaagccctg
gggcatacttggcacgacacctgcttcatttgcgcagtctgccacgtgaatctggagggg
cagccattctactccaagaaggacaaacccttgtgcaagaagcatgcacacgccatcaac
gtgtag
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