Phocoena phocoena (harbor porpoise): 136137034
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Entry
136137034 CDS
T11058
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03082
ATP-dependent chromatin remodeling
pphc04714
Thermogenesis
pphc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136137034 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
136137034 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
136137034 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136137034 (ARID1A)
03021 Transcription machinery [BR:
pphc03021
]
136137034 (ARID1A)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136137034 (ARID1A)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
Helix-turn-helix
ARID
136137034 (ARID1A)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136137034 (ARID1A)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136137034 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
136137034
NCBI-ProteinID:
XP_065751392
LinkDB
All DBs
Position
1:20815589..20885649
Genome browser
AA seq
2285 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAVAAERGEMKAAAGQESEGPA
VGPPQPLGKELQDGAESNGGGGGGGAGGGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG
GGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLA
ALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGS
GAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPTAAGGGTPQPTATPTLNQLLTS
PSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRSHHA
PMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQ
PYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQPGPSGYGQQGQAPYYNQQSPHPQQ
QQQPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPTPYPTQQST
TQQHPQSQPPYSQPQAQSPYQQPPPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPP
QELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPG
VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVP
GNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQ
MHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQ
MHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVA
MHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAG
MAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPER
KMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS
MQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQ
KRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPY
SRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTAAPQPNLMPSNPDSGMYS
PSRYPAQPQPQPQPQQQRHDSYGNQFSAQGTPSSSPFPSQQTTMYQQQQQNYKRPMDGTY
GPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPA
TAATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVAQQGTMWQ
GRNDMTYSYANRQSTGSAPQGAAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSA
PVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPP
VPASHIAAAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDP
GQRTLLDPGRFSKASSPAPMEGVEEEDLLGPKLEEEEEEDVIENDEEMAFAGKDKAASEN
SEEKLISKFDRLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFE
SKTELLPSRPHVPCPPVTRKYVTAVEGTPGTTEQEGPPTDGPPEKRITATMDDMLSTRSS
TLTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKR
CVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQG
VSCNKVEWWWDCLETLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQ
DPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKN
PVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQN
PPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLF
LIGQS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcgggaggaggcggggggcgaggcggcggcg
gtagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgcc
gtggggccgccgcagccactgggaaaagagctgcaggacggggctgagagcaatgggggt
ggcggcggcggcggagccggcggcggtggcgggcccggcgcggagccggacctgaagaac
tcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggc
ggcggtggtggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggccgcc
ttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgcc
gccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggca
gcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcagaac
tcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcc
taccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccggggtcc
ggcgcggcggcggccgccggctccaagccgcctccctcctccagcgcctccgcctcctcg
tcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggccccacagcg
gccggagggggaaccccccagcccaccgccacccccaccctcaaccaactgctcacgtcg
cccagctcggcccggggctaccagggctaccccgggggcgactacggcggcgggccccag
gacgggggcgctggcaagggcccggcggacatggcctcgcagtgctggggggctgctgct
gctgcggcggcggcggcggcggccgcctcgggaggagcccaacaaaggagccaccacgcg
cccatgagccccgggagcagcggcggcgggggtcagccgctcgcccggaccccgcagcca
tccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaaccca
tactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtacccagggcag
ccatatgggtcccagaccccgcagcggtacccgatgaccatgcagggccgagcgcagagt
accatgggcggcctctcttatgcacagcagattccaccttatggacagccaggccccagc
gggtatggtcagcagggccaggctccatattacaaccagcaaagccctcacccccagcag
cagcagcagccctactcccagcagccaccatcccagacccctcacgcccagccttcatat
cagcagcagcctcagtctcagccaccgcagctccagtcctctcagcctccgtattcccag
cagccatcccagcccccccatcagcagtccccaaccccgtaccccacccagcagtctacc
acccagcagcacccccagagccagcccccctactcacagccgcaggcacagtctccttac
cagcagccgccacctcagcagccagcatcctcgacgctttcccagcaggctgcgtaccct
cagccccagtctcagcagtcacagcaaactgcctattctcagcagcgcttccctccacca
caggagttatctcaagattcatttgggtctcaggcgtcctcagccccctcaatgacctcc
agtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttcaagcttgcct
gatctgtctggttcaatagacgatctccccatggggacagaaggagctctgagccctgga
gtgagcacatcagggatttcaagcagccaaggggagcagagtaatccagctcagtctcct
ttttctccccatacctcccctcacctgcctggcatccgaggcccctccccgtccccagtt
ggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgcca
ggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcatccttct
atgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaatccccagatgccc
cagtacagttccccccagcccgggtcggccttatctccacgtcagccttctggaggacag
atgcacacaggcatgggctcctaccagcagaactccatggggagctatggtccccaggga
agtcagtacggcccacagggaggctaccccaggcagccaaactataatgccttgcccaat
gctaactaccccagtgcaggcatggctggaagcatgaaccctatgggtgctggaggtcag
atgcatgggcagcctggcatcccaccttatggcacactccctccagggagaatgagtcat
gcctccatgggcaaccggccttatggccctaacatggccaatatgccacctcaggttggg
tcagggatgtgtcccccaccagggggcatgaaccggaaaactcaagaaactgctgtcgcc
atgcacgttgctgccaactctatccagaacaggccaccaggctaccccaatatgaatcaa
gggggcataatgggaactggacctccctatggacaagggattaatagtatggctggcatg
atcaaccctcagggacccccatatccgatgggtggaaccatggctaacaattcagcaggg
atggcagccagcccagagatgatgggtcttggggatgtcaagttaactccagccaccaaa
atgaacaacaaggcagatgggacacccaagacggaatctaaatccaagaaatccagttct
tctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgagcctgagagg
aagatgtgggtggaccgttatctggccttcacggaggagaaggccatgggcatgacaaat
ctgcctgctgtgggtaggaaacctctggacctgtaccgcctctatgtgtctgtgaaggaa
attggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcgaccaacctc
aatgtcggcacctcaagcagtgctgccagctccttgaaaaagcagtacatccaatgtctc
tatgcctttgagtgcaagatcgaacggggagaagaccctcccccagacatctttgcagct
gctgattccaagaagtcccagcccaagatccagcctccctctcctgcgggatcagggtca
atgcaggggccacagacacctcagtcaaccagcagttccatggcagaagggggagacctg
aagccaccaactccagcatccacaccacacagccagatcccccccttgccaggcatgagc
aggagcaattcggttgggatccaggatgcctttcctgatggaagtgaccccacattccaa
aagcggaattccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatg
atggggcgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaagctccg
gggagtgatcccttcatgtcctcaggtcagggccctaacggcgggatgggggacccctac
agtcgagctgccggccctgggctgggaaatgtggcgatgggaccgcgacagcactatccc
tatggaggtccttatgacagagtgaggacggagcccggaataggacccgagggaaacatg
ggcactgcagccccacagccgaatctcatgccttccaacccagactcggggatgtattct
cctagccgttaccccgcacagccgcagccgcagccgcagccgcagcagcaacgacatgat
tcctatggcaatcagttctccgctcaaggcaccccttccagcagccccttccccagccag
cagaccacgatgtatcagcagcagcagcagaattacaagcggccgatggatggcacatac
ggccctcctgccaagaggcacgaaggggagatgtacagtgtgccatacagcacggggcag
gggcagccccagcagcagcagttgcccccagcccagccccagcctgccagccagcaacaa
gctgctcagccttcccctcagcaagatgtgtacaaccagtatggcaatgcctatcctgcc
actgctgctactgagcgccgaccggcaggcggcccccagaaccagtttccattccagttt
ggccgagaccgtgtctcagcaccccctggctccagtgcccaacagaacatgccaccgcag
atgatgggcggccccatacaggcatcggctgaggttgctcagcaaggcaccatgtggcag
gggcgtaatgacatgacctacagttacgccaacaggcagagcacgggctctgccccgcaa
ggtgctgcctatcatggcgtgaaccgaacagatgaaatgctgcacacggatcagagagcc
aaccatgaaggcccatggccttcccatggcacacgccagcccccatatggtccttctgcc
cccgtgccccccatgacaaggccccctccatccaactaccagcccccaccgagcatgcag
aatcacattcctcaggtatccagccctgctcccctgccccggccaatggagaaccgcacc
tctcctagcaagtctccattcctgcactccgggatgaagatgcagaaggcgggccccccg
gtacctgcctcacacatagcagctgcccctgtgcagccccctatgattcggcgggacatc
accttcccacctggctctgtcgaagccacacagcctgtgctgaagcagaggaggcggctc
acgatgaaagacatcggaaccccggaggcatggcgggtaatgatgtccctcaagtctggg
ctgctggcagagagcacgtgggcattagacaccattaacatcctgctgtatgatgacaac
agcatcatgactttcaacctcagtcagctcccagggttgctagagctccttgtggaatat
ttccgacgttgcctgattgagatctttggcattttaaaggagtatgaggtgggtgaccca
ggacagagaacactactggaccctgggagattcagcaaagcgtctagtccagctcctatg
gagggggtggaggaggaagaccttctaggtcccaaactagaggaggaagaagaggaggac
gtaattgaaaatgatgaggagatggcctttgcgggcaaggacaaagccgcctcagagaat
agtgaggagaaactgattagtaagtttgacaggcttccagtaaagatcgtgcaaaagaat
gacccgttcgtggtggactgctcagataagcttgggcgcgtgcaggagttcgacagtggc
ttgctgcactggcggattggtgggggggacaccactgagcatatccagacccactttgag
agcaaaacagagctgctgccttcccggcctcatgtaccctgcccaccagtcactcggaag
tatgtcacagcagtagagggtacaccagggacaacagagcaggagggccccccgactgat
ggccctccagaaaaacggatcacagccactatggatgacatgttgtccacccggtctagc
acactgaccgaggagggagctaagagtgtagaggccaccaaggaaagcagcaagtttcca
tttggcatcagcccagcacagagccatcggaacatcaagatcctagaggatgaaccccac
agtaaagatgagaccccactgtgtacccttctggactggcaggattcccttgccaaacgc
tgcgtctgtgtctccaataccatccgaagtctgtcatttgtgccaggcaacgactttgag
atgtccaagcacccggggctgctgctgatcctgggcaagctgatccttctgcaccacaag
cacccggaacggaagcaggcgccactgacttacgagaaggaggaggagcaggaccaaggg
gtgagctgcaacaaagtggagtggtggtgggactgcttggagacgcttcgggaaaacacc
ttggtcacgctcgccaacatttcggggcagttggacctctccccataccccgagagcatt
tgcctgcctgtcctggatggactcctacactgggcagtctgcccttcagctgaagcccag
gaccccttctccaccctgggccccaacgccgtcctctccccacagagactggtcttggaa
accctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacacccccc
ttcagccgcctggagaagttgtacagcaccatggtgcgcttcctcagtgaccgaaagaac
ccggtgtgccgggagatggctgtggtactgctagccaacctggcgcagggtgacagcctg
gcggcccgtgccattgcagtgcagaaaggcagcatcggcaacctcctgggcttcctggag
gatagccttgctgccacacagttccagcagagccaggccagcctgctccacatgcagaac
ccgccctttgagccaactagtgtggacatgatgcgacgggctgcccgtgcgctgctggcc
ctggccaaggtggacgagaaccactcggagttcacgctgtatgagtcacggctgttggac
atctcggtatcaccgttgatgaactcattggtttcacaagtcatttgcgatgtactgttt
ttgattggccagtcatga
DBGET
integrated database retrieval system
