Phocoena phocoena (harbor porpoise): 136137188
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Entry
136137188 CDS
T11058
Symbol
SOX17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
136137188 (SOX17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136137188 (SOX17)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
136137188 (SOX17)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
136137188
NCBI-ProteinID:
XP_065751659
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All DBs
Position
17:4007819..4009630
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AA seq
408 aa
AA seq
DB search
MSSPDAGYASDEQSQPRSALPAVMAGLGPCPWAESLSPLGDMKMKGEAAASSGAPAGTAG
RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPPAAALGPEGGRVAMDGLG
LPFPEQGFPAGPPLLPPHMGGHYRDCQALGAPPLDGYPLPTPDTSPLDGVEPDPAFFAAP
LPGDCPAAGPYSYAQAADYAGPPEPPAAGPLHARLGPEPAGPAMPGLLAPPSALHMYYGA
MGSPAAAGGGRGFQMPPQPPPPGPGQPSPPPEALPCRDGADPGQPAELLGEVDRTEFEQY
LHFVCKPEMGLPYQGHDSGVNLADSHGAISSVVSDASSAVYYCNYPDV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccggatgcggggtacgccagtgacgagcagagccagccccggagcgcgctg
cccgccgtgatggccgggctgggcccctgcccctgggccgagtcgctgagtcccctcggg
gacatgaagatgaagggcgaggcggcggcgagcagcggggcgccggccgggacggcgggc
cgagccaagggcgagtctcgcatccggcggccgatgaacgccttcatggtgtgggcgaag
gacgaacgcaagcgcctggcgcagcagaacccggacctgcacaacgccgagctgagcaag
atgctgggcaagtcatggaaggcgctgacgctggcggagaagcggcccttcgtggaggag
gccgagcggctgcgcgtgcagcacatgcaggaccacccgaactacaagtaccggccgcgg
cggcgcaagcaggtgaagcggctgaagcgggtggagggcggcttcctgcacggcctcgcc
gagccgccggcggccgcgctgggccccgagggcggccgcgtggccatggacggcctgggc
ctgcccttccccgagcagggcttccccgcgggcccgccgctgctgcccccgcacatgggc
ggccactaccgcgactgccaggctctgggcgcgcccccgctcgacggctacccgttgccc
acgccagacacgtccccgctggacggcgttgagcccgaccccgccttcttcgccgcgccg
ctgcctggggactgtccggccgccggaccctacagctacgcgcaggccgcggactacgcg
gggcccccggagccgcccgccgccgggcccctgcacgcccggctcggcccggagcccgcg
ggccccgcgatgccgggcctcctggcgccccccagcgccctgcacatgtactacggcgcg
atgggctcgccggcggcggcgggcggcgggcgcggcttccagatgccaccgcagccgccc
ccgccgggcccggggcagccgtcgccgccgcccgaggcgctgccctgccgggacggcgcg
gacccaggccagccggccgagctcctcggggaggtggatcgcacggaattcgaacagtac
ctgcactttgtgtgcaagcccgagatggggctcccctaccagggacacgactccggcgtg
aatctggcggacagccacggggccatctcctcggtggtgtccgacgccagctccgcggtg
tattactgcaactaccccgacgtctga
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