Phocoena phocoena (harbor porpoise): 136137579
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Entry
136137579 CDS
T11058
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03013
Nucleocytoplasmic transport
pphc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136137579 (UPF3A)
03015 mRNA surveillance pathway
136137579 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136137579 (UPF3A)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136137579 (UPF3A)
mRNA cycle factors
P-body specific factors
136137579 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
136137579
NCBI-ProteinID:
XP_065752026
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All DBs
Position
18:80485707..80511176
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AA seq
585 aa
AA seq
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MRSEKEGEGGPGLPVTTRGPSGKEKPSPTESHFRRESQRREPEAPVAWSPGCGGGAVEPR
EEKRTVLSKVVIRRLPPSLTKEELEQQLHPLPAHDYLGLFTADLSLYPHLYSRAYINFRN
PDDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKTAKRKLKKKDTQAGSIEDDPEYKKF
LETYCVEEEKTSANPETLLGDIEAKTRELIARRTTPLLEYIKSRKLEKQRIREEKREERR
RKELERKCLREEEIRRRREEERCKRRAAEKQQKTAEKEVRRKLLKKSEKGEESSTEKPKE
RGEEIDTRDGKQELGPSCAVMKPKPLESSLQELRGKSQNDSDKEQRDVERRFREKELEAQ
RYHLGDSRKHRAHYELDKFSRRSKEELKRGKGFTPDRGKKGSQDGGGPVGAAETPGREKS
EDELAAKKEDTGSRVSAQISRQAVVCRKPCQGVHPFRSGVQRGGSCDCKALSALIVSTLH
TGTPLDNEVAVNTRASSAQPAWHWGRIVTEEHCNGSSPCQARPRGAGQPSQPGVQDRPGL
QLYQPRGGNRARECDGRPPEEGRDRRRGEVEDSPGAGAEKSEEAE
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagaaggagggagaggggggcccagggttgcccgttactacgcggggtccg
agcgggaaggagaagccgtcgcccacagaaagccacttccgccgggagtctcagcggcgg
gagcctgaagcgccagtagcctggtcccccggctgtgggggcggtgcagtcgaacctcgc
gaggaaaagaggacggtcctcagcaaggtggtcatccggcggcttcctcccagcctcacc
aaggaggagctggaacagcagcttcacccccttcctgcacatgattacctcgggctcttt
actgctgatctcagtctttatcctcatctctattcaagagcatacattaattttagaaat
cctgatgacatcctgctttttagagatcgttttgatggatatatcttcattgacagtaaa
ggcctagaatatcctgcagtggtagaatttgctccattccagaagacagccaaaaggaag
ctaaagaaaaaagacacccaagctggaagcattgaagatgatccagaatataagaagttt
ttagaaacttactgtgtggaggaggagaaaactagtgccaatcctgaaactcttctggga
gacatagaggcaaagacaagagaacttattgctagaagaaccacacctcttttggagtat
attaaaagtagaaaattagaaaagcagagaattcgagaagaaaagcgagaagaacggagg
aggaaggagttggaaaggaagtgcttacgggaagaagagataagaaggagaagggaagag
gagagatgtaagaggagagcagcagaaaaacagcagaaaactgctgagaaagaagtaagg
aggaagcttctcaagaaatcagaaaagggagaggagtcaagcactgagaagccaaaagaa
agaggagaggaaattgacaccagagatgggaaacaggaactcggtcccagctgtgcagtc
atgaagcccaagcccttggagagctcgttgcaggagctcaggggaaagtcacaaaatgac
agtgataaagagcaaagggacgtggagagaagattccgagaaaaagagcttgaagcacaa
agataccacttgggtgacagcagaaaacatagagctcactatgagttggataagttttca
agaagaagcaaagaagagctgaaaagggggaaaggattcaccccagaccgagggaagaag
gggagccaggatgggggcggccctgtgggggcagcagagacaccaggaagggagaagagc
gaagatgagctggcagccaagaaggaggacacgggaagccgagtctctgcccagatctca
cgccaggctgtggtgtgcaggaagccatgccagggtgttcaccccttcagatctggagtg
cagagaggtggcagctgcgactgcaaagctctctccgccctgattgtcagcacgctgcac
acaggcactcctttggataatgaggtggccgtaaacacccgggccagctctgcacaaccg
gcatggcattggggtcgcatcgtcacagaggagcactgtaacgggtcatctccctgccag
gcccggccccgtggtgctggccagccctcacagcctggcgtccaggaccgaccaggcttg
cagctgtaccagcccagaggtggcaaccgagcccgtgaatgtgatggaagaccccctgag
gagggccgtgacaggaggaggggtgaggtggaagattcaccaggggctggagctgagaag
agcgaagaggcagagtga
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