KEGG   Phocoena phocoena (harbor porpoise): 136137598
Entry
136137598         CDS       T11058                                 
Symbol
RFC3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03030  DNA replication
pphc03410  Base excision repair
pphc03420  Nucleotide excision repair
pphc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136137598 (RFC3)
   03410 Base excision repair
    136137598 (RFC3)
   03420 Nucleotide excision repair
    136137598 (RFC3)
   03430 Mismatch repair
    136137598 (RFC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pphc03032]
    136137598 (RFC3)
   03036 Chromosome and associated proteins [BR:pphc03036]
    136137598 (RFC3)
   03400 DNA repair and recombination proteins [BR:pphc03400]
    136137598 (RFC3)
DNA replication proteins [BR:pphc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    136137598 (RFC3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    136137598 (RFC3)
Chromosome and associated proteins [BR:pphc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    136137598 (RFC3)
DNA repair and recombination proteins [BR:pphc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     136137598 (RFC3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    136137598 (RFC3)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA AAA_lid_RFC1 AAA_22 Sigma54_activ_2 ABC_tran AAA_2 AAA_16 zf-HC2 nSTAND6 AAA_11 DUF2247
Other DBs
NCBI-GeneID: 136137598
NCBI-ProteinID: XP_065752064
LinkDB
Position
18:10047041..10061837
AA seq 356 aa
MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
LETNSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPF
TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMIF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagcctctgggtggacaaataccggccctgctctttgggacagctggactatcacaag
gagcaggcggcccagctgcgcaacctggtgcagtgtggtgactttcctcatctgttagtc
tatggaccatcaggtgctggaaaaaagacaagaattatgtgtattctacgtgaactttat
ggtgtgggagtggaaaagttgagaattgaacatcagaccatcacaactccatctaaaaag
aaaattgaaattagcactattgcaagcaattaccaccttgaagttaatcccagtgatgct
ggaaatagtgaccgggtagtaattcaggagatgttgaaaacagtggcacaatcacagcaa
cttgaaacaaactctcaaaaagattttaaagtcgtgttattgacagaagttgacaaactc
actaaagatgctcagcatgccttgcgcagaaccatggaaaagtatatgtccacctgcagg
ttgatcttgtgttgcaattctacatcaaaagtgataccacctattcgtagtaggtgcctt
gcagttcgtgtgcctgctcccagcattgaagatatttgccatgtgttatctactgtgtgc
aagaaggaaggtctaaatcttccttcacaactggctcgtagacttgcagagaagtcctgc
agaaatctcagaaaagccctgcttatgtgtgaagcatgcagagtgcaacaatatcctttt
actgcagatcaagaaatccctgaaacagattgggaggtgtatctgagggagactgccaat
gctattgtcagtcagcagactccacagaggctccttgaagttcgtgggagactctatgag
cttctgactcattgtattcctcctgaaataataatgaagggccttctctcagaactttta
cataattgtgatggacaactgaaaggggaagtggcccagatggcagcttactatgaacat
cgtctacagctgggtagcaaagccatttatcacttggaagcatttgtggccaaatttatg
gcactttataagaagttcatggaggatggattggaaggcatgatattctga

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