KEGG   Phocoena phocoena (harbor porpoise): 136137970
Entry
136137970         CDS       T11058                                 
Symbol
PER1
Name
(RefSeq) period circadian protein homolog 1
  KO
K21944  period circadian protein 1
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc04710  Circadian rhythm
pphc04713  Circadian entrainment
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    136137970 (PER1)
   04713 Circadian entrainment
    136137970 (PER1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pphc03400]
    136137970 (PER1)
DNA repair and recombination proteins [BR:pphc03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    136137970 (PER1)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 136137970
NCBI-ProteinID: XP_065752476
LinkDB
Position
19:complement(51552222..51561060)
AA seq 1270 aa
MSGPLEGADGGGDPRPGESFCPGGAPSPGPPQHRPCPGPSVADDTDANSNGSSGNESNGP
ESRGASQRSSHSSSSGNGKDSALLDTTESSKSTNSQSPSPPSSSIAYSLLSASSEQDNPS
TSGCSSEQSARARTQKELMTALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQANQE
YYQQWSLEEGEPCAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGV
LLRCKQDVFRGARFSELLAPQDVGVFYGSTAPSRLPTWGTGASAGSGLKDFTQEKSVFCR
IRGGPDRDPGPRYQPFRLTPYVTKIRVADGAPAQPCCLLLAERVHSGYEAPRIPPDKRIF
TTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPF
DHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFTPPVPSPTL
SLDPDIQELSEQIHRLLLQPVHSPSPTGFCGVGQVTSPGPLLSPGSSSASNGGDAEGPGP
PAPVTFQQICKDVHLVKHQGQQLFIESRARPLPQPHVPATGTFKAKTLPCQSADPELEVA
PALTQAPLALAPEEAERKEASSCSYQQINCLDSILRYLESCNLPSTTKRKCTSSSSCTAS
SASDEDRQRAGAVSVGAEKDPSAVLSGEGAAPLKEPVVGGGALSPLALANKAESVVSVTS
QCSFSSTIVHVGDKKPPESDIIMMEDLPGLPPGPAPSPAPSPTVAPDPATGAYRPVGLTK
AVLSLHTQKEEQAFLSRFRDLGRLRGLDGSSTAPSGPGESGCRHGPAAPGRRHHCRSKAK
RSRQHQNPQAEAPCHVSHPSPVPSSAPWPPPAATPPFPAVVQPCPLPAFSPRGGPQPLPP
VPTSVSPAAFPAPLVTPVVALVLPNYLFPAPPTYPCGAPQAPASHSPSPSLPLPPPSPPR
CPDSLLFNSRCSSPLQLNLLQLEESPRVEGSSAARPPPSEETADPAARPVEITESSNQDA
LSGSSDLLELLLQEDSRSGTGSAASGSLGSGSGSGSHEGSSTSASITRSSQSSHTSKYFG
SVDSSEAEAGAARARAEPGDQVIKYVLQDPIWLLMANADQHVMMTYQVPSRDMASVLKQD
RERLRAMQKQQPRFSEDQRRELGAVHSWVRKGQLPRALDVMACVDCGSSTQDPGHPDDPL
FSEMDGLGLEPMEEGGGEAGGGGGEGEGGDEAQAQAGATVSSSQDLAMEEEGQGGSSSSP
ALPAAENGTS
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgagcggccccctcgaaggggctgatgggggaggggaccccaggccgggggaatccttt
tgtcctggaggggctccatcccctgggcctccacagcatcgaccttgtcctggccccagc
gtggctgacgacacggatgccaacagcaatggctccagcggcaatgagtccaatggaccg
gagtccaggggtgcatctcagcggagctcacatagctcctcctcaggcaatggcaaggac
tcggcccttctggacaccactgaaagcagcaagagcacaaactctcagagcccatcccca
cccagcagttccattgcctacagcctcctgagtgccagctcagagcaggacaacccgtct
accagtggctgcagcagtgaacagtcagctcgggcaaggacccagaaagaactcatgacg
gcgctgcgggagctcaagcttcggctgccaccagagcgcaggggcaagggccgctctggg
accctggccacgctgcagtacgcactggcctgtgtcaagcaggtgcaagccaaccaggaa
tactaccagcagtggagcctggaggagggcgagccttgtgccatggacatgtccacctac
actctggaggaactggagcacatcacatctgagtacacgcttcgcaaccaggatactttc
tccgtggctgtctccttcctgacaggccgcatcgtctacatttctgagcaggcaggtgtc
ctgctgcgctgcaagcaggatgtgttccgcggtgcccgcttctcagagctcctggctccc
caggatgtgggcgtcttctatggttccactgccccatctcgcctgcccacctggggcacg
ggggcctcggcaggttcaggcctcaaggacttcacccaggagaagtctgtcttctgccgt
atcagagggggtcccgaccgagatcccgggcctcggtaccagccattccgcctaacccca
tatgtgaccaagatccgggtcgctgatggggcccctgcacagccgtgctgcctgctgctt
gcagagcgcgttcactctggttatgaagctccccggattccccccgacaagaggatcttc
actacaaggcacacgcccagctgcctcttccaggatgtggatgaaagggccgccccgttg
ctgggctacctcccccaggacctcctgggggccccagtgctccttttcctgcatcccgag
gaccgacccctcatgctggccatccacaagaagatcctgcagctggctggccagcccttt
gaccactcccctatccgcttctgcgcccggaatggggagtacgtcaccatggacaccagc
tgggctggcttcgtgcacccctggagccgcaaggtggcctttgtgttgggccgccacaaa
gtacgcacggcgcccctgaatgaagacgtgttcactcccccagtccccagtcccactctc
tccctggaccctgatatccaggagctctctgagcagatccaccggctgctgttacagcct
gtgcacagccccagccctaccgggttctgtggagtcggccaggtgacttccccaggccct
ctcctcagccctggctcctccagtgccagcaacgggggtgacgccgagggacctgggcct
cctgcgccggtgaccttccagcagatctgtaaggatgtgcacctggtgaagcatcagggg
cagcagctttttattgagtcccgggcccggcctctgccccagccccatgtccctgctaca
ggcacgttcaaggccaagacacttccctgccaatccgcagacccagagctggaggtggcc
cctgctctgacccaggccccgctagccttggctcctgaggaggctgagcggaaagaagcc
tccagttgctcctaccagcagatcaactgcctggacagcatcctcaggtacctggagagc
tgcaacctccccagcacgaccaagcgcaaatgcacctcctcctcgtcctgcaccgcctct
tcggcctccgacgaggacaggcagcgggcgggagcggtctctgtgggggccgagaaagat
ccatcggcagtgctgtctggggagggggctgcccctctgaaggagccggtggtgggagga
ggcgccctgagcccgctcgccctggccaataaggcggagagtgtggtgtccgtcaccagt
cagtgtagcttcagctccaccatcgtccatgtgggagacaagaagcccccggaatcggac
atcatcatgatggaggacctgcctggcctgcctcccggcccagctcccagcccagccccc
agccccacggtggcccctgacccagccacaggtgcctaccggccagtgggcctgaccaag
gctgtgctgtccctgcacacccagaaggaggagcaggccttcctcagccgtttccgcgac
ctcggcaggctgcgtggacttgacggctcctccacggccccctcgggccccggtgagtcg
ggctgccgccacggccccgcagcccccggccgccgccaccactgccgatccaaagccaag
cgctcccgccagcaccagaaccctcaggccgaagccccctgccacgtctcccacccatca
cctgtgccatcctctgccccctggcccccaccagcagccacaccgcccttcccggctgtg
gtccagccctgccccctccccgcattctcccccagaggaggcccccagcctctccctcct
gtgcccacatctgtgtctcctgcggctttccctgccccgctggtgactccagtggtggct
ttggtgctccctaactatcttttccctgccccacccacctacccctgtggggcaccccag
gcccccgcctcccactccccttctccgtccctgcccctgccgccccccagccctccccgc
tgccccgactctctgctcttcaactcgagatgcagctccccgctccagctaaatctgctg
cagcttgaggagtccccccgtgtcgaggggagtagtgctgcgcgcccccctcccagcgag
gagactgctgacccagcggccagaccggtggagataactgagtcctccaaccaggacgcg
ctctcgggctccagcgacctgctggagttgctgctgcaggaggactcacgctctggcacg
ggctctgctgcctcgggctccttgggctctgggtctggctcaggctcccatgaggggagc
agcacctcagccagcatcacgcgcagcagtcagagcagccacacgagcaagtacttcggc
agcgtcgattcttccgaggctgaggctggggctgcccgtgccagggctgagcccggggac
caggtcattaagtacgtgctccaggatcccatctggctgctcatggccaatgctgaccag
catgtcatgatgacctatcaggtgccctccagggacatggcctctgtgctgaagcaggac
cgggagcggctccgggctatgcagaagcagcagcctcggttctcagaggaccagcggagg
gaactgggtgctgtgcactcctgggtccggaagggtcaactgcctcgggcccttgatgtg
atggcttgtgtggattgcggtagcagcacccaagaccctggccaccctgatgacccactc
ttctcggaaatggatggactggggctggagcccatggaggagggtggaggcgaggcgggt
ggcggtggtggtgagggcgagggcggtgatgaggcccaggcccaagctggggccacggtc
tcaagctctcaggacctggccatggaggaggagggacaaggtgggagctcatccagtcca
gccttacctgccgcagaaaatggcaccagctag

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