Phocoena phocoena (harbor porpoise): 136138213
Help
Entry
136138213 CDS
T11058
Symbol
DDX42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pphc
Phocoena phocoena (harbor porpoise)
Pathway
pphc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136138213 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pphc03041
]
136138213 (DDX42)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136138213 (DDX42)
Spliceosome [BR:
pphc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136138213 (DDX42)
Complex B
136138213 (DDX42)
Complex C
U2 SnRNP specific factors
136138213 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
136138213
NCBI-ProteinID:
XP_065752904
LinkDB
All DBs
Position
19:complement(14609579..14652395)
Genome browser
AA seq
940 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSGFGKSAPPQLPSFYK
IGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMA
EVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL
EYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNL
RVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGS
GKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSG
PSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVI
SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGSENTDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQK
AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPIASATKGIPGFGSTGNLSSAPVTYP
SAGAQGVNNAASGNNSREGIGGGNGXRERYTENRGGSRHSHGESGNRHGDSPRHGDGGRH
GEGYRYPESSSRHADGRRHADGHPHGENRHGGGGGRHGESRGASDGRNGESRKDXSXNQS
KMXPRWTSTKMDKMDSKTDKTTDGFAVPEPPKRKKSRWDS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggtttcgct
attagtgcgggaaagaaggaggaaccaaaactcccacagcagtcccatagtgcctttggg
gcaaccagctcttctggatttggaaagtcggctccaccacagctcccttccttctacaaa
attggttctaaacgggccaactttgatgaagaaaacgcatattttgaagatgaggaagaa
gattctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgccagcaa
ttccattccaagccagtagattctgacagcgatgatgatcccttagaggcattcatggct
gaagtggaggatcaagcggctagagacatgaagagacttgaagaaaaggacaaggaaaga
aaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttatttt
cggtacatggcagagaatccaactgctggcgtggttcaggaggaagaggaagataatttg
gaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctcttcct
cccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaacat
gaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaatctt
cgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggtttgat
gagcaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacagtgc
cagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggcagt
gggaaaactgcggcctttatctggcccatgttgattcatataatggaccagaaagaattg
gaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcagcag
atccacgcagaatgcaagcggtttgggaaagcgtataatctccgatcagtggccgtgtat
ggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgttgtc
tgtacaccaggtcgacttattgatcatgtgaagaagaaagctaccaaccttcaaagagtc
tcttaccttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccaggtg
cgatccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaactttt
cggaaaaagattgaaaaactggccagagacatcctgattgatcctattcgtgtggtgcag
ggggatattggagaggcaaatgaagatgtgactcagattgtggagattctgcattctggg
cctagtaaatggaactggctcacccggcgtctagtggagttcacctcttcaggaagtgtc
cttctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaaacaggag
ggtcatagtcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggttatt
tcagactttaagaaaaaggacatcccagtcctcgtggccacagatgttgcagcccgtggt
ctggacattccttcaattaagactgtcattaactatgatgtggcccgagatattgatacc
catacgcataggattggccgaacaggacgagcgggtgagaaaggcgtggcctataccttg
ctgacacccaaggacagcaattttgccggtgaccttgtccggaacttggaaggagccaat
caacatgtttccaaggaactcctagatctggccatgcagaatgcctggtttcggaaatcc
cgcttcaaaggagggaaagggaaaaagctgaacattggtggaggaggcctaggctacagg
gagcggcctggcctcggctctgagaacacggaccgaggaagtaacaacaatgtaatgagc
aattatgaggcctacaagccctccacaggagccatgggagatcggctgacggcaatgaaa
gcagctttccagtcacagtacaagagtcactttgttgctgccagtttaagcaaccagaag
gctggaagctctgctgctggggcgagtggatggactagtgcagggagcttgaattcagtt
ccaactaattcagcccaacagggccataacagtcctgacagccccattgccagtgccacc
aagggcatcccaggctttggcagtactgggaacctcagcagtgccccagtgacctatcct
tctgccggagcccagggagtcaacaacgcagcttcagggaataacagccgagaagggatt
gggggtggcaatgggnaaagagagagatatactgagaaccggggtggaagccgtcatagt
cacggagagagtgggaatcggcatggcgatagcccacgtcatggagacggtggtcgccat
ggagagggataccgctacccagaaagcagcagccgtcatgctgatgggcgccgtcatgct
gatggccatcctcatggagagaacaggcatggaggaggtggaggcagacatggagagagc
cgaggtgcaagtgatggtcggaatggtgaaagcaggaaagattaatcgtgaaatcaaagc
aagatgnacccaaggtggaccagcaccaagatggacaagatggacagcaagacagataag
actactgatggctttgctgtccccgagccacccaagcgcaagaaaagtcgatgggacagt
tag
DBGET
integrated database retrieval system
