Phocoena phocoena (harbor porpoise): 136138254
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Entry
136138254 CDS
T11058
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03030
DNA replication
pphc03420
Nucleotide excision repair
pphc03430
Mismatch repair
pphc03440
Homologous recombination
pphc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136138254 (RPA1)
03420 Nucleotide excision repair
136138254 (RPA1)
03430 Mismatch repair
136138254 (RPA1)
03440 Homologous recombination
136138254 (RPA1)
03460 Fanconi anemia pathway
136138254 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136138254 (RPA1)
03032 DNA replication proteins [BR:
pphc03032
]
136138254 (RPA1)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136138254 (RPA1)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136138254 (RPA1)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
136138254 (RPA1)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
136138254 (RPA1)
MMR (mismatch excision repair)
136138254 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
136138254 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
DUF8001
Ubiquitin_At1g33420
Motif
Other DBs
NCBI-GeneID:
136138254
NCBI-ProteinID:
XP_065752970
LinkDB
All DBs
Position
19:46939044..46993011
Genome browser
AA seq
617 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTTIKPILQVINIRPIATGNNPPRYRLLMSDGLNTLSSFMLAT
QLNRLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELEVLKSAEEVGLKIGNPVPYNE
GHGQQPAVPPPVSAASPPASRPQQQNGSSGVGSTVSKTFGASKTFGKPGGPSLGNSSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDGHHLPTVQF
DFTGVGDLENKPKDSLVDIIGICKSYEDVTKITVKSNNREVSKRNIYLMDMSGKVVNATL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALAGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSANIADFQENQWVTCFQESAEAIL
GQSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
EYGRRLIVSIRRNAAAM
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagatacaacc
ataaaacccattctccaagtcattaacatccgtcccattgctacagggaataatccaccc
cgttatcgactgcttatgagcgatggattgaatactctgtcttctttcatgttggcaaca
cagttgaaccgtcttgttgaggaagaacgattgtctagcaactgtatttgccagattaac
cgatttattgtgaacactctgaaagatggaaggagagtggttattttgatggagttagaa
gttttgaaatcagctgaagaagttggattaaagattggcaatccagtgccctataatgaa
ggacatggacagcagccagcagttcctcctccagtctcagcagccagtccaccagccagc
aggccccagcaacagaatgggagctcgggagtgggttctactgtatctaagacttttggt
gcctcaaagacatttggaaaacctggaggtcccagcctagggaacagctccgggggaaca
caggccaaagtggtacccattgccagcctcaccccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaaa
cttttctctatagaactagttgatgagagtggcgaaatcagagcgactgctttcaacgag
caagtggacaagttctttcctcttattgatgtgaacaaggtctattacttctctaaaggc
accctgaagattgccaacaaacagttcacagccgtcaaaaacgactatgagatgaccttc
aataatgagacttctgtcatgccctgtgaagatggtcatcatttacccacagtccagttt
gatttcacaggggttggtgacctagagaacaagcctaaagactcacttgtagacataatc
ggaatctgcaagagctatgaagatgtcactaaaatcacagtgaagtctaacaacagagaa
gtctctaagaggaatatctatttgatggacatgtcagggaaagtggtgaatgctactctg
tggggagaagatgctgatagatttgatggttctagacaacccgtgatggcgatcaaagga
gccagagtttctgattttggtggacggagcctctctgtactgtcttcgagtactgtcatt
gtgaaccctgacatcccagaggcctacaagcttcgtggatggtttgactcggaaggacaa
gccttagctggcgtttccatctctgatctaaagagtggaggaataggagggagcaacacc
aactggaaaactttatatgaggttaaatcagagaacttgggccaaggtgacaagcccgac
tattttagctctgtggcgacagtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggactgcaataagaaagtgattgatcaacagaatggattgtaccgctgc
gagaagtgtgacagtgaatttcccaatttcaagtaccgcatgatcctgtcagcaaatatt
gctgactttcaagagaatcagtgggtcacatgtttccaggagtctgcagaggccatcctt
ggacaaagcactgcttaccttggggagttaaaagagaagaacgagcaagcgtttgaggaa
gttttccagaatgccaacttcagatcttttacattcaggatcagggtcaaattggagacc
tacaatgatgagtctcgaattaaggccactgtgatggacgtgaagcccgtggactacaga
gaatatggcagaaggttgatcgtgagcatcaggagaaacgctgcggcgatgtga
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integrated database retrieval system
