Phocoena phocoena (harbor porpoise): 136138271
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Entry
136138271 CDS
T11058
Symbol
SOX9
Name
(RefSeq) transcription factor SOX-9 isoform X1
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04024
cAMP signaling pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04024 cAMP signaling pathway
136138271 (SOX9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136138271 (SOX9)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
136138271 (SOX9)
SSDB
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Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
136138271
NCBI-ProteinID:
XP_065752989
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All DBs
Position
19:4616433..4621564
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AA seq
509 aa
AA seq
DB search
MNLLDPFMKMTDEQEKGLSGAPSPSMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
NGHPGVPATHGQVTYTGSYGISSTAATPAGASHVWMSKQQAPPPPPQAPPPAPPAPPQPP
AQAPPQPSAQAPPQPPAQAHTLTTLSSEPGQAPRTHIKTEQLSPSHYSEQQQRSPQQIAY
SPFSLPHYSPSYPPVTRSQYDYTDHQNSGSYYSHAAGQGSGLYSTFTYMNPAQRPMYTPI
ADTSGVPSIPQTHSPQHWEQPVYTQLTRP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctggaccccttcatgaagatgaccgacgagcaggagaagggcctgtccggc
gcccccagcccctccatgtccgaggactcggcgggctcgccctgcccttcgggctccggc
tccgacaccgagaacacgcggccccaggagaacacgttccccaagggcgagccggacctg
aagaaggagagcgaagaggacaagttccccgtgtgcatccgcgaggccgtcagccaggtg
ctcaaaggctacgactggacgctggtacccatgccggtgcgcgtcaacggctcgagcaag
aacaagccgcacgtcaagcggcccatgaacgccttcatggtgtgggcgcaggcggcgcgc
aggaagctcgccgaccagtacccacacctgcacaacgccgagctcagcaagacgctgggc
aaactctggagacttctgaatgagagcgagaagcggcccttcgtggaggaggcggagcgg
ctgcgcgtgcagcacaagaaggaccacccggattacaagtaccagccgcggcggaggaag
tcggtgaagaacggccaggcggaggccgaggaggccacggagcagacgcacatctcccct
aacgccatcttcaaggcgctgcaggccgactcgccgcactcctcctccggcatgagcgag
gtccattcccccggagagcactccgggcaatcgcagggtccaccgacgccacccaccacc
cccaaaaccgacgtgcagccgggcaaggctgacctgaagcgagaggggcgcccgctgcca
gaggggggcagacagccccccatcgacttccgcgacgtggacatcggcgagctgagcagc
gacgtcatctccaacatcgagaccttcgacgtgaacgagttcgaccagtacctgccgccc
aatggccacccgggggtgccggccacgcacggccaggtcacctacacgggcagctacggc
atcagcagcacagccgccaccccggcgggcgctagccacgtgtggatgtccaagcagcag
gcgccgccgccgcccccgcaggcgcccccgccggccccgccggcgcccccgcagccgccc
gcgcaggcgcccccccagccgtccgcgcaggcgcccccgcagccgccggcgcaggcgcac
acgctgaccacgctgagcagcgagccgggccaggccccgcgaacgcacatcaagacggag
cagctgagtcccagccactacagcgagcagcagcagcgctcgccgcagcagatcgcctac
agccccttcagcctcccgcactacagcccgtcctacccgcccgtcacccgctcgcagtac
gactacactgaccaccagaactccggctcctactacagccatgcggcgggccagggctcc
ggcctctactccaccttcacctacatgaacccggcgcagcggcccatgtacacccccatc
gccgacacctccggggtcccttccatcccgcagacccacagcccccagcactgggaacag
cccgtctacacacagctcaccagaccttga
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