Phocoena phocoena (harbor porpoise): 136138709
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Entry
136138709 CDS
T11058
Symbol
SRRM1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03013
Nucleocytoplasmic transport
pphc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136138709 (SRRM1)
03015 mRNA surveillance pathway
136138709 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136138709 (SRRM1)
03041 Spliceosome [BR:
pphc03041
]
136138709 (SRRM1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136138709 (SRRM1)
Spliceosome [BR:
pphc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
136138709 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
136138709
NCBI-ProteinID:
XP_065753601
LinkDB
All DBs
Position
1:19148346..19177794
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AA seq
918 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS
TSDILKVPKPEPVPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRR
RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSS
SSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS
NRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQ
QRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKET
SPRMQMGKRWQSPVTKSGRRRRSPSPPPARRRRSPSPAPPPRRRRSPTPPPRRRTPSPPP
RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRPSPSPPPKRRVSHSPPPKQRSS
PVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPAVRRGASS
SPQRRLSPSPSSRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPA
PPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDPEGGGKKKKKKKDKKHKKDKKHK
KHKKHKKEKAVAAAAAAPVTPAAIAAPTTASAQEEPEAEPEPKKETESEAEDNLDDLEKH
LREKALRSMRKAQVSPQS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggaacaagtgcagaacaggataatcggttcagcaacaaa
cagaagaagctactgaagcagctgaaattcgcagaatgcctagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataacaaaacgagtaacggaaatcctt
gggtttgaagatgatgttgtgattgagtttatattcaaccagctggaagtgaagaatcca
gactccaaaatgatgcaaatcaacctgactgggtttttgaatggaaaaaatgctagagaa
tttatgggagaactgtggcccctgctcttaagtgcacaagaaaacatcgctggaatccct
tctgctttcctagaactgaagaaagaagaaataaaacagagacagattgaacaagaaaag
ttggcatctatgaaaaagcaagatgaagacaaggataagagggataaggaagaaaaagaa
agcagcagagaaaagagggagcggtctcgaagcccaagaagacgcaaatccagatctcct
tcccctagaagacgatcttcccctgtcaggagagagagaaagcgcagtcattctcgatct
ccccgtcacagaaccaagagccggagtccttcccctgctccagagaagaaggaaaaaact
ccagagctcccagagccatcagtgaaagtaaaagaaccttcagtacaagaggccacttct
actagtgacatcctgaaagttcccaagcctgaaccagtaccagagcctaaagaaccttct
ccggagaaaaactccaaaaaggaaaaggaaaaggagaagacccgaccaagatctcggtcg
cgttccaagtcaagatcccggacacgttctcgctctccttctcatactcgaccgagaagg
cgccatagatcccgatcaagatcatactcacctagaaggcggccaagcccaagaagacgg
ccatctcctcgaagaagaactccaccgagacgaatgcctcctccaccaaggcatagaagg
agtagatctccagtgagacgaagaaggcgttcatcggcatccttgtccgggagtagctcg
tcctcttcttcatctcgttcccggtcaccgccaaagaagcctccaaagaggacatccagc
ccccctcgaaaaactcgtaggttatctccttcagcaagtcctccgaggcgaaggcacagg
ccatcacctccagcaactccaccaccaaaaactcgtcattccccgacaccccagcagtca
aaccgtacgaggaaaagtcgtgtttctgtctctccagggagaacttcaggtaaagtgaca
aaacataaaggtactgagaaaagagagtccccttcaccagcacccaagcctagaaaagta
gagttatctgaatcagaagaagataaaggtggcaaaatggctgcagcagattctgtgcag
cagagacgccaatacagacgacagaaccagcagtcttcctctgattctggctcctcctct
tcctcagaagatgagcgacccaaaaggtcccacgtgaagaatggtgaggtaggcaggcgg
cggagacattccccttcccggagtgcctctccatcacctcgaaagcgccagaaagagact
tcccctcggatgcagatgggaaagcgatggcaatcgccagtgactaaaagtggtagacgg
aggagaagcccctccccaccgcctgccagaaggcgacgttctccttctcctgctcctcca
cctcgtcgacgcaggtctcccacaccaccaccacgacgcaggactccttctcctccccca
cgtcgtcgctcaccttccccaagaagatactctcctccaatacagaggagatattctcct
tctccacctccaaagagaagaacggcttcaccccctccccctcctaaacgaaggccatca
ccgtctccaccaccaaagcgtcgggtctcccattcgccacctcccaaacaaagaagctcc
ccagtcaccaagagacgttcgccttcgttgtcatcaaagcatcggaaagggtcttccccg
agccgatctacccgggaggcccggtcaccacaaccaaacaaacggcattcgccctcacca
cggcctcgagctcctcagacctcctcaagtcctccagctgttcgaagaggagcatcgtca
tcaccccaaagaaggctgtccccatctccaagttctaggcccattaggagagtctccagg
actccggaacccaaaaagataaaaaaagctgcctcaccaagccctcagtcggtaaggagg
gtctcatcttcccgatctgtctcgggatctcctgagccagcagctaaaaaacccccagca
cctccatcccctgtccagtctcagtcaccctctaccaactggtcaccagcggtaccggtt
aaaaaggctaaaagcccaacaccaagcccatcaccggcaaggaattcagacccagaagga
ggtggaaagaaaaagaagaaaaagaaggacaagaaacacaaaaaggataagaagcacaag
aagcacaaaaaacacaagaaggaaaaggctgtagctgcagctgctgcagctcctgtgacc
cctgcagccattgctgctcccacaaccgcgtcagcacaggaagaaccagaggcagagcca
gagcctaagaaggagactgaaagtgaggctgaagataaccttgatgacttagaaaagcac
ctgcgtgaaaaggccctgagatcaatgcggaaggctcaagtgtccccacagtcctag
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