Phocoena phocoena (harbor porpoise): 136138836
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Entry
136138836 CDS
T11058
Symbol
BRIP1
Name
(RefSeq) LOW QUALITY PROTEIN: Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03440
Homologous recombination
pphc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136138836 (BRIP1)
03460 Fanconi anemia pathway
136138836 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136138836 (BRIP1)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136138836 (BRIP1)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
136138836 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
136138836 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
ARCH_RTEL1
DUF6399
Motif
Other DBs
NCBI-GeneID:
136138836
NCBI-ProteinID:
XP_065753761
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All DBs
Position
19:complement(28404695..28592448)
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AA seq
1242 aa
AA seq
DB search
MSSVCSEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSA
LAWQQSLSGKPVNEGLSKKAEVPLSCCCTCHSKNFTNNDVNQGTSHHFNSPSIPTSERNG
TLSTCQDSPEKTTLAAKLSAKKQASRYRDENDDFQVEKKRIRPLETTQQIRKRHCFEKEV
HHLDAKVASGKTTKLNSPLGKINSFSPQNPPGNCSRCCCSTKQGDSQDSSNTTKKDHGGK
SKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCME
LLDGKNGKFCYFYHGVHKISDQHILQTLQGMCKAWDIEEFVSLGKKLKACPYYTARELMQ
EADIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSITEVQLRFARD
ELDSMVNNNIRKKDHEPLRAVCYSLINWLEANSEHLVERGYESSCKVWSGSDMLLNLHKM
GITTATFPILQGHFSAILQKEEKVSSVHGKEEAREVPIISASTQIMLKGLFMVLDYLFRQ
NSRFADDYKVAIQQTYSWINQTDTSDKNGFLVLPKNKKRLRQKAAVHVLNFWCLNPAVAF
SDINGKVWTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRSL
CATYQHTETFEFQDEVGALVLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGVWHNLELV
KTVIVEPQRGEKTDFDELLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVI
TIGIPFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWG
ALILVDDRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEFSKKHRKVIDVYKEDRK
SIQDNESPLAVACLKDNTSTYLLEAASHLSPEYPREGKVKMCLXELQCPKMIDKSPSLPR
DIISRKEKNMKNDPLLLEESTQAVGAEKIVISRSTSPTFNKQTNRVSWSGSNFLEQYLTG
KILTGTPKFRSSEDCASNSSTFKTEKGCEAVLPLTDKYESSSLTVNTSVGPCPQSETIVP
SIKINATLLNPEDPDILLSLVSEEAELSTSNTAFETEAEDESIYFTPELYDPIDTNEEKN
ELVGTDRDNRLANNSNCILAEDLFEIKTMKGMDSVREMKAEDCTGTKLNRLTHIKESKVD
DIGSNVKMTHINELELGKTHETDVKNFKQSPPKNKDVFPGVR
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtatgttctgagtatacaattggtggggtgaagattaactttccttgtaaa
gcttatccatcacagcttgctatgatgaattctattgtcagaggattaaatagtaagcag
cattgtttgttggagagccccacagggagtgggaaaagcttagccttactttgctctgct
ttagcgtggcagcagtctcttagtgggaagccagtgaacgaaggcttaagtaaaaaagct
gaagtaccattgtcgtgttgttgtacatgccattcaaagaattttacaaacaatgatgtg
aaccagggaacttcacatcatttcaacagtccaagtataccaacttctgaaagaaatggc
actttgtcaacttgtcaagactctcctgaaaaaactacactggctgcaaagctatctgct
aagaaacaggcatccaggtacagagatgaaaatgatgattttcaagtagagaagaaaaga
attcgacccttagaaactacacagcagattagaaaacgtcattgttttgaaaaggaggtg
caccatttggatgcaaaagttgcttcaggaaagaccacaaaactcaactccccattagga
aagataaactccttttctccacaaaatccccctggtaactgttctaggtgctgttgttct
actaaacaaggagacagtcaagattcttcaaataccactaagaaggatcatggggggaag
tccaagatacccaaaatatattttgggacacgcacacacaagcagattgctcagattact
agagagctccggaggacagcatactcaggggtcccaatgactattctttccagcagggat
cacacttgtgtccatcctgaagtagtaggtaacttcaacagaaatgaaaagtgcatggaa
ttgctagatggaaaaaatggaaaattctgctatttttatcatggtgttcataaaattagt
gatcaacacatattacagactctccaagggatgtgcaaggcctgggatatagaagaattc
gtcagcttggggaaaaaactaaaggcatgtccatattacacagcacgagaactaatgcag
gaggctgacataatattttgtccctacaactatcttctagatgcacaaataagggaaagt
atggatatcaatctgaaagaacaggttgtcattttagatgaagctcataatattgaggac
tgtgctcgggaatcagcaagttacagtataacggaagttcagcttcggtttgctcgggat
gaactagatagtatggttaacaataatataaggaagaaagaccatgaacccctacgagct
gtgtgctatagcctcattaattggttagaagcaaactctgaacatcttgtggaaaggggt
tatgaatcatcctgtaaagtgtggagtggaagtgacatgctcttaaatttacacaaaatg
ggcataaccactgctacttttcctattttgcagggacatttttctgctatccttcaaaaa
gaagaaaaggtctcatcagttcatggtaaagaggaggcaagagaagtacctattattagt
gcttcaactcaaataatgctcaaaggactttttatggtgcttgactatctttttaggcaa
aatagcagatttgcagatgattataaagtcgctattcaacagacttactcttggataaat
cagactgatacttcagataaaaatgggttcttggttctaccaaaaaataagaaacgttta
cgacagaaagcagcagttcatgtgctgaatttttggtgcttaaatccagctgtggccttt
tcagatattaatggcaaggtttggacgattgttttgacatctgggacattatcaccaatg
aaatccttttcatcagaacttggtgttacatttactatccaactggaggctaatcatgtc
attaataactcacaggtttgggttggcaccattgggtcaggccccaagggtcgcagtctc
tgtgctacctaccagcacacggaaacatttgagttccaggatgaagtgggagcacttgtg
ttatctgtgtgccagactgtgagccaaggaattttgtgtttcctgccatcttataagtta
ctagaaaagttaaaagaacgttggctctccactggtgtatggcataatctggagttggtg
aagacagtcattgtagagccacagagaggagaaaaaactgattttgatgaattactgcag
atgtactatgatgcgatcaagtacaaaggagaaaaagatggcgccctcctggtggcagtt
tgtcgtggtaaagtgagtgagggtctggatttctcagatgacaacgcccgtgctgtcata
acaataggaattccttttccaaatgtgaaagatctacaggttgaactaaagcgacaatat
aatgaccagcattcaaaattaagaggtcttttaccaggtcgtcagtggtatgaaattcaa
gcatacagggccttaaaccaggccctaggtaggtgtattcgacacagaaatgattgggga
gctcttattctagtggatgatcgcttcaggagtaacccaagtcgatacatatctggactt
tctaagtgggttcggcagctgattcagcaccattcaacctttgagagtgcgctggagtcc
ttggctgaattttccaaaaagcaccgaaaggtcattgatgtatacaaagaagacagaaaa
tctatacaggacaatgagtctccgcttgcagtggcttgtttgaaggataatacctcaact
tatttattagaagcagcaagccatctatcaccagaatatcctagggaaggtaaagtaaaa
atgtgtctannagagctacagtgtcctaaaatgatagataaaagtccatctttaccaaga
gacatcatctccagaaaggagaaaaatatgaaaaatgatccattattattggaagagtct
acccaggcagtaggagcagaaaaaattgtgatttccagatccacaagcccaaccttcaac
aaacaaacaaacagagttagctggtctggcagtaattttctggaacagtatcttactggt
aaaattttgactggaacgcctaagtttaggtcatcagaggactgtgcctctaattcttcc
actttcaaaacagaaaagggatgtgaagcagttttgccactcactgataaatatgagtcc
tcctctctgacagtaaacacatcagttggaccatgccctcaatcggaaaccattgttcca
tcaataaagattaatgctactctcctgaatccagaagatccagacattctgttatctcta
gtaagtgaagaagctgaactttctacttcaaatacagcttttgaaacagaagcagaggat
gaatctatctattttacacccgaactttatgatcccatagatacaaatgaagaaaagaat
gaactagttggaactgatagagacaacagattggctaataattcaaattgcattttagct
gaagatctttttgaaattaaaactatgaaaggaatggattcagtcagagaaatgaaagct
gaggattgcacaggcacaaagttgaatagactcacgcatattaaagaaagtaaagttgat
gacattggtagtaatgtaaaaatgactcatataaatgaattggaactgggaaaaactcat
gaaacggatgtaaagaactttaaacagtctcctcccaaaaataaagatgtgttccctggt
gttaggtaa
DBGET
integrated database retrieval system
