KEGG   Phocoena phocoena (harbor porpoise): 136138920
Entry
136138920         CDS       T11058                                 
Symbol
CPSF4L
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03015  mRNA surveillance pathway
pphc05164  Influenza A
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    136138920 (CPSF4L)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    136138920 (CPSF4L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pphc03021]
    136138920 (CPSF4L)
   03019 Messenger RNA biogenesis [BR:pphc03019]
    136138920 (CPSF4L)
Transcription machinery [BR:pphc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     136138920 (CPSF4L)
Messenger RNA biogenesis [BR:pphc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     136138920 (CPSF4L)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCCH_12 zf-CCCH_RBM22 zf-CCCH_4 zf-CCCH_11 zf-CCCH_DUS3L Nab2-like_zf-CCCH_ zf-C3H1
Other DBs
NCBI-GeneID: 136138920
NCBI-ProteinID: XP_065753869
LinkDB
Position
19:complement(5500951..5508194)
AA seq 166 aa
MQEVIAGLEQITFTFEKDVEMQKGTGLLPFQGMDKSSSAVCNFFAKGLCEKGKLCPFRHD
RGEKMVVCKHWLRGLCKKGDQCKFLHQYDVTRMPVCYFYSKFGDCSNKECPFLHVKPAFK
TRDCPWYDQGFCKDGPLCKYRHVRRIMCINYSAGFCPEGPKCQFAQ
NT seq 501 nt   +upstreamnt  +downstreamnt
atgcaggaggtcattgcagggctggagcagatcactttcacctttgagaaggatgtagag
atgcagaagggcactggactcctgcctttccagggcatggacaagtccagctcagctgtg
tgcaacttcttcgctaaagggctctgcgagaaagggaagctgtgccccttccggcacgac
cgaggggagaagatggtggtgtgtaagcactggctccgggggctgtgcaagaagggcgac
cagtgcaagttcctgcaccagtacgacgtcaccaggatgcccgtgtgctacttctactcc
aagttcggtgactgcagcaacaaggaatgtccctttctccatgtgaagccggccttcaag
acccgggactgtccgtggtatgaccaaggtttctgcaaggatggtcccctgtgtaaatat
cgccacgtccgcagaataatgtgtattaactactcagctggcttctgccctgagggaccc
aaatgccaatttgcacagtaa

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