Phocoena phocoena (harbor porpoise): 136139236
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Entry
136139236 CDS
T11058
Symbol
SMARCD2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03082
ATP-dependent chromatin remodeling
pphc04714
Thermogenesis
pphc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136139236 (SMARCD2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
136139236 (SMARCD2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
136139236 (SMARCD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136139236 (SMARCD2)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136139236 (SMARCD2)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136139236 (SMARCD2)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136139236 (SMARCD2)
PBAF complex
136139236 (SMARCD2)
GBAF(ncBAF) complex
136139236 (SMARCD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
136139236
NCBI-ProteinID:
XP_065754210
LinkDB
All DBs
Position
19:14586091..14596188
Genome browser
AA seq
531 aa
AA seq
DB search
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
PMGPAGPAAQFQRPGMSPGSRMPMAGLQVGPPAGSPFGSAAPLRPGMPPTMMDPFRKRLL
VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGNPAGDKVASWELRVEGKLLD
DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggccgtggcgcgggcgggttcccgctgcctccgctgagccctggcggcggcgcc
gttgccgcggccctgggagctccgcctccgccagcaggacccggcatgctgcccggaccg
gcgctcagggggcccgggccggctggaggcgtggggggccctggggccgccgccttccgc
cccatgggccccgcgggccctgcggcgcagttccagaggcctggcatgtcaccagggagc
cggatgcccatggctggcttgcaggtgggaccccctgccggctccccatttggctcagct
gctccacttcgacctggcatgccacccaccatgatggacccattccgaaaacgcctgctt
gtgccccaggcccagcccccgatgcctgcccagcgccgggggttaaagaggaggaagatg
gcagataaagttctacctcagcgaattcgggagcttgtcccagagtctcaggcgtacatg
gatctcttggcttttgagcggaagctggaccagaccattgctcgaaagcggatggagatc
caggaggccatcaaaaagcctctgacgcaaaaacgaaagctgcggatctatatttctaat
acgttcagtcccagcaaggcagaaggtgatagtgcaggaaccgcagggacccctggggga
aaccccgcaggggacaaggtggcttcctgggaactccgagtagagggaaaactgctggat
gatcctagtaaacagaagaggaagttttcttcattctttaagagcctcgtcattgagctg
gacaaggaactgtacgggcctgacaaccacctggtggagtggcaccggatgcccaccacc
caggagacagatggcttccaggtgaaacggcccggagacctcaacgtcaagtgcaccctc
ctgctcatgctggatcatcagcctccccagtacaagttggacccccgactggcgaggctg
ctgggggtgcacacacagacgagggctgccatcatgcaggccctgtggctctacatcaaa
cacaaccagctgcaggacggccacgagcgggagtacatcaactgcaaccggtacttccgc
cagatcttcagttgtggccgactccgtttctctgagattcccatgaagctagccgggttg
ctgcagcatccagaccccattgtcatcaaccatgtcattagcgtggaccctaacgaccag
aagaagacagcctgttacgacattgatgtggaggtggatgacccgcttaaggcccagatg
agcaattttctggcctccaccaccaatcagcaggagatcgcctctcttgatgtcaagatc
catgagaccattgagtccatcaaccagctgaagacccagagggacttcatgctcagtttt
agcactgacccccaggacttcatccaggaatggctccgttcccagcgccgggacctcaag
atcatcactgatgtgattgggaaccctgaggaggagagacgagctgctttctaccaccag
ccctgggcccaggaagcagtggggaggcacatctttgccaaggtgcagcagcgaaggcag
gaactggaacaggtgctgggaatccgcctgacctaa
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