Phocoena phocoena (harbor porpoise): 136140359
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Entry
136140359 CDS
T11058
Name
(RefSeq) LOW QUALITY PROTEIN: mitochondrial inner membrane m-AAA protease component AFG3L1-like
KO
K08956
AFG3 family protein [EC:3.4.24.-]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
136140359
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pphc01002
]
136140359
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pphc03110
]
136140359
Peptidases and inhibitors [BR:
pphc01002
]
Metallo peptidases
Family M41: FtsH endopeptidase family
136140359
Chaperones and folding catalysts [BR:
pphc03110
]
Other chaperones and cochaperones
AAA proteases
136140359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M41
AAA
AAA_lid_3
AAA_22
AAA_5
TIP49
AAA_16
AAA_2
AAA_33
Mg_chelatase
RuvB_N
AAA_28
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
136140359
NCBI-ProteinID:
XP_065754500
LinkDB
All DBs
Position
20:59510475..59529691
Genome browser
AA seq
843 aa
AA seq
DB search
MRQAPGGRLGVWRPMTYSPLNWMLQWLVAAAGSRAVAVPLAVLQGCGGGPRSGRTAGAGV
RALGTAQQVSGEALPSGSGRQGRWLRSTRGDAIRLRRPARGPGVGTGTPSSGGVAAATTS
PGQRGGAGCGNPGTERRRRGGGDHTPGRLAPGLQPIPAAEQADARPNRSPSVLRAPALFF
ESSRCLSAPCPLPARPHSALPRAACSELRSGLAPLQTYRVSSGARSDREVDRLEVVNKQX
VITAPGTSSEKFVWFNIGSVHTFERNLETAHWELGIELAEQTAVVYTTESDGSFLRRLVP
TFLLIGSLLYVARRGPMGAGRGRRGGGLFTVGETTAKIMKNNVGVRFADVAGCEEAKLEI
MEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEASVPFITVNGSEFLEM
FVGVGPARTLRGLLFHVRDVYAMARRNAPCVLFIEEIDAMGRNCGRGRFGGQSEQENXLN
QLLVELDGFSSTTSVMVLAGTNCPDILDLALTRPGRFDRQIYIGPPDIKGRSSIFRVHLR
PLKLDESLSEDALARKLVALTPGFTGADISNVCNEAALIATRHLSPFVQEKRLEQAVERV
VGGLEKKMQVLQPSEKMTVAYREAGHAVVGWFLEHADALLKVSIIPRGKGLGYAQCLPRE
QYLYTREQLFDHTCAMLGGRVAEQLFLHITMGAQDDLRKVAQSAYAQIVQFEMSEKLGQV
SFDLPRPGEVLVEKPYSEAAAQLIDQEAWRLVSSAHAHTLDLLTRSRERVDEVGRRLLGK
EVLERADMVELLGPRPFAEKTAYEELVEGTGGLEDTSLPQGLKGWCWGLEEGGTECPLQE
SPA
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaggcacccggaggtcggctgggggtgtggcgccctatgacctattcgccgctg
aactggatgttgcagtggctggtggcggcggccggcagcagggcggtggccgtgccgctc
gccgtgctgcagggatgtggcggtggcccacgaagcggcaggacggctggggcaggcgtg
agggccctcggaaccgcccagcaggtgagcggggaggcgttgccctccggttctgggcgg
caggggcggtggctgcgctcgacgcgcggtgacgccatccggctgcgccggccggcgcgg
ggaccgggtgtgggaaccgggacaccgagtagcgggggcgtggcggcggctaccacatcc
cccggccagcgcgggggagcggggtgcgggaacccgggcaccgagaggcggaggcgcggc
ggcggcgaccacacccccggccggctggccccggggctccagcccatccccgcggctgag
caggctgacgctcgcccgaaccggtctccgtctgtcctccgagcccccgcccttttcttc
gaaagttcccgctgcctctcagcgccctgcccactgcccgcgcgtcctcattccgctctc
ccaagagccgcgtgcagcgaactgcgttcaggcctcgctccgctgcaaacctaccgtgtc
tcctcgggcgcccgctccgaccgcgaggtggaccggctggaggtcgtgaacaaacagnnt
gttattactgcccctgggacatcgtctgagaagtttgtgtggttcaacatcggcagcgtg
cacaccttcgagcgcaacctggagaccgcccactgggagctgggcatcgagctcgcggag
cagacggccgtggtctacaccaccgagagcgatgggtctttcttgcgaaggctggtgccc
acctttctcctgatcggaagcctcctctatgtcgcgaggaggggcccgatgggggctggg
cgtggcaggagaggagggggcctctttaccgttggcgagaccacagccaagatcatgaag
aacaacgtcggcgtgcgctttgcagacgtggctggttgcgaagaagccaagttggagatc
atggagtttgtgaatttcctgaagaatcccaagcagtatcaggacctcggggccaaaatt
ccaaagggagccatgctcactggtcctcctggtaccggcaaaacgcttctcgccaaggca
actgcaggggaggccagtgtgcccttcatcaccgtgaacgggtccgagttcctggaaatg
tttgtcggcgtcggtccagctcggaccctgcgtggactcctgtttcacgtccgtgacgtg
tatgcaatggcccgaagaaatgctccctgtgtcttgttcattgaggagattgacgcgatg
ggcaggaattgcggccgtgggcgctttgggggccagagtgagcaggagaacnccctgaac
cagctgctcgtggagctagacgggttcagctctaccacgagcgtcatggtgctggcgggc
accaactgccccgacatccttgacctggccctgacgcggcccggccggtttgaccgtcag
atttacattggcccccctgacatcaaaggcaggtcgtccatcttcagggtccacctgcgt
ccactcaagttggacgagagcctcagtgaggacgccctggcgaggaagcttgtggccctc
actccaggcttcacaggtgctgatatttctaatgtttgcaacgaagcggccttgatcgcc
acccgccacctgagtccttttgtccaggagaagcgcttggagcaggcggttgagagggtc
gtcggaggtctcgagaagaagatgcaggtcctacagcccagcgagaagatgacggtagcc
taccgtgaggctggccacgcggtggtgggctggttcctggagcatgcagacgccctgctc
aaggtgtccatcatcccccggggcaaggggctcgggtatgcccagtgcctgcccagggag
cagtacctgtacacgcgggagcagctcttcgaccacacgtgcgccatgctgggtggccgg
gtggccgagcagctgttcttgcacatcaccatgggggcccaggacgacctgaggaaggtc
gcccagagtgcctacgcccagattgtgcagttcgagatgagcgagaagctgggccaggtg
tcctttgacctcccccggcctggcgaggtgctggtggagaagccgtacagcgaggccgcg
gcccagctcatcgaccaggaggcttggcggctggtcagctctgcgcacgcgcacaccctg
gacctgttgacgcgctcccgggagcgggtggacgaggtgggcaggcggctgctggggaag
gaggtgctggagcgtgccgacatggtggagctgcttgggccccgaccctttgcggagaag
accgcctacgaggagctcgtggagggcaccggtggcctggaggacacgtcccttccccag
gggctgaagggctggtgctgggggctggaggagggcggcacggagtgccccctgcaggag
agcccagcctag
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