Phocoena phocoena (harbor porpoise): 136140368
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Entry
136140368 CDS
T11058
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136140368 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136140368 (EDC4)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136140368 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
136140368 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
DUF445
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
136140368
NCBI-ProteinID:
XP_065754514
LinkDB
All DBs
Position
20:40949675..40956648
Genome browser
AA seq
1131 aa
AA seq
DB search
MLRSNHSTWPVDVSQIKQGFIVVKGHSTCLSEGALSPDGTVLATASHDGFVKFWQIYIEG
QDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSWTC
LQTIRFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGRACFSSI
SEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEEENDSLGADGTHGAGAMESAAGVLIKLFC
VHTKALQDVQIRFQPQLNPDVVVPLPTHPAHEDFAFGESRPELASEGLGSATHGSQSDLR
RIVELPAPADFLSLSSETKPKLMTPDAFMTPSTSLQQVCCGRSIAASPSSSSSSSSSSSL
TAVSAMSSTSAVDPSLPRPPEELTLSPKLQLDGGLTMSSSSSLQASPRSLLPGLLPSPAD
KLPPKGPGQVPTAASTLSLELQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASE
ALSRGFGSSAPEGLEPDSMASAASALHLLSPRPRPGPELGPQLSLDGGPGDGDRHSTPSL
LEAALTQEATAPDSQVWPTAPDITRETCSSLAESPRNGLQEKHKSLAFHRPPYHLLQQHD
SQDASAEQSDHDDEVASLASAAGGFGTKVPTPRLPAKDWKTKGSPRASPKLKRKGKKDDG
DSSVGSRLTEHQVAEAPEDWPALIWQQQRELAQLRHSQEELLQRLCTQLEGLQSTVTGHV
ERALESRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKT
VPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPM
QAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPV
LAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQLHVAVGSLQEAILAQVQRIVKGEVSVA
LKEQQAAVTSSIMQAMRSAAGTPVPATHLDCQAQQAHILQLLQQGHLNQAFQQALTAADL
NLVLYVCETVDPGQVFGQPPCPLSQPVLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHS
DPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKAARRLSLMLHGLMTPSLP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgctccgctccaaccacagcacctggcccgtggatgtcagccagatcaagcagggcttc
atcgtggtaaaaggccacagcacatgcctaagtgaaggggccctctcacctgatgggact
gtcctggctaccgcaagtcatgatggcttcgtcaagttctggcagatttacattgagggg
caggatgagccaaggtgtttgcacgagtggaagcctcacgatgggaggcccctctcctgc
ctcctgttctgtgacaaccacaagaaacaggatcctgaggtccccttctggaggttcctt
attactggtgctgaccagaatcgggagctgaagatgtggtgcacggtgtcctggacctgc
ctgcagaccattcgcttctccccagatatcttcagctcagtgagtgtgccccccagcctc
aaggtttgcctggacctctcagcagaatacttgatactcagcgatgtgcaacggaaggtc
ctctatgtgatggaactgctgcagaaccaggaggagggccgtgcctgcttcagctccatc
tctgagttcctgctcacccaccctgtgctgagcttcggtatccaggttgtgagtcgctgc
cggctgcggcacactgaggtgctgccagccgaagaggagaatgacagcctaggggctgat
gggacccacggagctggtgccatggagtctgcagctggtgtgctcatcaagctcttttgt
gtgcacactaaggcattgcaagatgtacagatccgcttccagccacagctgaaccctgac
gtggtggtcccgctccctacacaccctgcccatgaggactttgcatttggagagtctcga
ccagaactggcttctgagggcctgggatcggccactcacggctcccagtctgacctccga
cgcatcgtggagctgcctgcacctgccgacttcctcagtctgagcagtgagaccaagccc
aagctgatgacacctgacgccttcatgacacctagcacctccctgcagcaggtatgctgc
gggaggagtatcgctgcatctcccagtagcagcagcagcagcagcagcagttcctctctt
acggcggtgtctgccatgagcagtacttcggccgtggacccctccttgcccaggccacct
gaggagctgaccttgagccccaagctacagctggatggcggtctgacaatgagcagcagc
agcagcctgcaggcaagcccacgtagcctcctgcctggcctgctcccaagtccggccgac
aaattgcctcccaaagggcctgggcaggtgcctactgctgcctctacactatccctggag
ctgcaggaagtggagcccctggggctaccccaggcgtcccccagccgcacccgctccccc
gatgttatctcctcggcttccactgctctgtcccaggatatccctgagatcgcatctgag
gcgctgtcccgtggctttggctcctccgctccggagggcctggagccagacagtatggcc
tcagctgcttcagcactacacttgctgtctccacggccccggccgggacccgagcttggc
ccccagcttagcctggatggaggccctggggatggggatcggcatagtaccccttccctc
ctggaggcagccttgacccaggaggccacggcccctgacagtcaggtctggcctacggca
ccagacattactcgtgagacctgcagcagcctggcagagagcccccggaatggcctccag
gaaaagcacaagagcctggcctttcaccgaccaccttatcacctgctacagcaacacgac
agtcaggacgccagtgccgagcaaagcgaccatgatgatgaggtggccagcctggcctct
gctgcagggggttttggcaccaaagttcccactccacgtcttcctgccaaggactggaag
accaaaggatcccctcgggcctcacccaagctcaagcgaaagggcaaaaaggatgacggg
gattcgtccgtgggatcccggctcacagagcaccaggtggcagaggcccctgaggactgg
ccagcactaatttggcaacagcagagagagctggcacagcttcggcacagccaagaagag
ctgctacagcgtctgtgcacccaacttgaaggcctgcagagcaccgtcacgggccacgta
gaacgtgccctagagtcacggcacgagcaggagcagcggcgactggagcgggcactggcc
gagggacagcagcgtggtgggcagctgcaggagcagctgacacaacagctgtcccaagcg
ctatcttcagctgtggctgggcggctggagcgcagcatacgggatgagatcaagaagacg
gttcctccgtgtgtgtctaggagtctggagcccgtggcaggccaactgagcaactcagtg
gccaccaaactcacagccgtggagggtagcatgaaagagaatatctccaagctgctgaag
tccaagaacttaacagatgccattgcccgagcagccgcagacacgttacaggggccaatg
caggccgcctaccgtgaagccttccagagcgtggtactgcccgcctttgagaagagctgc
caggccatgttccagcagattaatgatagcttccgactgggcacgcaggaatacttgcag
cagctggagagccacatgaagagccgaaaggcacgagaacaggaggcgcgggagcccgtg
ctggcccagctgcggggcctggtcagcacactgcagggagccacggagcagatggcggct
accgtgtccagcagcgttcgggctgaggtgcagcaccagctgcacgtggctgtgggcagc
ctgcaagaggcaattttagcacaggtgcagcgcattgttaagggtgaggtgagtgtggca
ctcaaggagcagcaggctgccgtcacctctagcatcatgcaggccatgcgctcagccgct
ggcacacctgtccctgccacccacctcgactgccaagcccagcaagcccatatcctgcag
ctgctgcagcagggccacctcaatcaggccttccagcaggccctgacagctgccgacctg
aacctggtgctgtacgtgtgtgaaactgtagacccaggccaggtttttgggcagccacct
tgccccctctcccagcctgtactcctttcactcatccagcaactggcctctgaccttggc
actcgaactgacctcaagctcagctacctggaagaggctgtgatgcacctggaccacagt
gaccccatcactcgggaccacatgggctccgtcatggcccaggtgcgccagaagctcttc
cagttcctgcaggcggagccacacaactcacttggcaaagcggcccggcgtctcagcctc
atgctgcacggccttatgacccccagcctcccttag
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