Phocoena phocoena (harbor porpoise): 136140396
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Entry
136140396 CDS
T11058
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136140396 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136140396 (SF3B3)
03041 Spliceosome [BR:
pphc03041
]
136140396 (SF3B3)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136140396 (SF3B3)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
136140396 (SF3B3)
Spliceosome [BR:
pphc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136140396 (SF3B3)
Complex B
136140396 (SF3B3)
Complex C
U2 SnRNP specific factors
136140396 (SF3B3)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
136140396 (SF3B3)
TFTC complex
136140396 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
136140396
NCBI-ProteinID:
XP_065754558
LinkDB
All DBs
Position
20:complement(46200451..46247432)
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacttgaccttgcagcgagccactggcatcagctttgccattcatggc
aacttttctggaaccaaacaacaggaaattgttgtttcccggggaaagatcttggagctg
cttcgccctgaccccaacaccggcaaagtacacactctactaactgtggaagtatttggt
gtcatccggtcactcatggcctttaggttgacaggtggcacaaaagactacattgtggtt
ggtagtgactcaggtcggattgttattctggaataccagccatctaagaatatgtttgag
aaaattcaccaagaaacctttggcaagagtggatgccgccgcattgttcctggccagttc
ttagctgtggatcccaaagggcgagctgttatgattagcgccattgagaaacagaaattg
gtgtatatcttgaacagagatgctgcagcccggcttaccatttcatctccactggaggcc
cacaaagcgaacactttagtgtatcatgtggtcggagtagatgtgggatttgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaactggggaagca
gcggctaatacccagcagacacttactttctatgagttagaccttggtttaaatcatgtg
gtccgaaaatacagtgaacctttggaggaacatggaaacttccttattacagttccaggg
gggtcagatggtccaagtggagtgctgatttgctctgaaaactacatcacctataagaac
tttggtgaccaaccagatatccgctgtccaattccgaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtctgctctgccacccataagaccaagtcaatgttcttc
tttttggcccaaactgagcagggagatatctttaagatcactttggagacagatgaagat
atggttaccgagatccggctcaagtattttgatactgtgcctgttgctgctgccatgtgt
gtgcttaaaacaggcttccttttcgtagcatcagaatttggaaaccattacttatatcaa
attgcacatcttggagatgatgatgaagaacctgagttttcatctgccatgcctctggaa
gaaggagatacattcttttttcagccaagaccactcaaaaaccttgtgctggttgatgag
ttggacagcctctctcccattttgttttgccagatagctgacctggccaatgaagacacc
ccacagctatatgtggcctgtggtaggggaccgaggtcatctctgagggtcttaaggcat
ggacttgaggtatcagaaatggctgtctcagagttacctggtaaccccaatgctgtctgg
acagtgcgtcggcacattgaagatgagtttgatgcttacatcattgtgtctttcgtgaat
gccacacttgtgttgtccattggagagactgtagaagaagtgactgactctgggtttctg
ggcactaccccaaccttgtcctgctccttgttaggagatgatgccttagtgcaggtgtat
cctgatggcattcggcacatacgagcagacaagagagtcaatgagtggaagactcctgga
aagaaaacaattgtgaaatgtgcagtgaaccaacgacaagtggtgatcgccctgacagga
ggagaactggtctattttgaaatggatccctcaggacagctgaatgaatacacagagcgg
aaggagatgtcagcagatgtggtgtgcatgagtctggccaacgtcccccctggagagcag
cggtctcgcttcctggctgtggggctggtggacaatactgtcagaatcatctccctggat
ccctcagactgtttgcaacctttgagcatgcaggctctcccagcccagcctgagtccttg
tgtattgtggaaatgggtgggactgagaagcaggatgagctgggtgagaggggctctatt
ggcttcttatacctgaatattgggctacagaatggtgtgttgctgagaacagtcctggac
cctgtcactggggatctgtctgacacccgcactaggtacctggggtcccgtcctgtgaaa
ctctttcgtgtccggatgcaaggccaggaggcagtgttggccatgtcaagccgctcatgg
ttgagctattcttaccaatctcgtttccatctcacccccctgtcttacgagaccctggag
tttgcatctggcttcgcctctgaacagtgccctgagggcattgtggccatctccaccaat
accctgaggattttggcattggagaagctgggtgctgtcttcaatcaagtagcctttcca
ctgcagtacacacccaggaaatttgtcatccaccctgaaagtaacaaccttatcatcatt
gagactgaccataatgcctacactgaggccacaaaagctcagaggaagcagcagatggca
gaggaaatggtagaagcagcaggggaggatgagcgagagctggctgcggagatggcagca
gcattcctcaatgaaaacctccctgagtccatttttggagctcctaaggctggcaatgga
cagtgggcctctgtgatccgagtgatgaatcctattcaggggaacacactggaccttgtc
cagctggaacagaatgaagctgcttttagtgtggctgtgtgcaggttctccaacactggc
gatgattggtatgtgctggtgggtgtggccaaagacctgatactgaatccccgatctgta
gccgggggctttgtctatacctacaagctcgtgaacaatggggaaaaactggagtttttg
cacaagactccagtggaagaggtccctgctgccattgccccattccaggggagggtgttg
attggtgtggggaagcttctgcgagtctatgacctgggaaagaagaagttactccgaaag
tgtgagaacaagcatatcgccaattacatctctgggatccagacaattggacatagggta
attgtatctgatgtccaggaaagtttcatctgggttcgctacaagcgtaatgagaaccag
cttatcatctttgctgatgatacctacccccgatgggtcacaacagctagcctcctggac
tacgatactgtggctggggcagacaagtttggcaacatttgtgtcgtgaggctcccacct
aacaccaatgatgaagtggatgaggatcccactggaaacaaagccctgtgggaccggggt
ttgctcaacggggcctctcagaaggcagaagtgatcatgaactatcacgtgggcgagaca
gtactttcgttacagaagaccacgctgatccctggaggctcagaatcgcttgtctatacc
accttgtcaggaggaattggcatccttgtcccgttcacatcccatgaggaccatgacttc
ttccagcatgtggaaatgcacctccggtctgagcatccccctctctgtgggcgagaccac
ctcagttttcgttcctattacttccctgttaagaatgtgattgatggagatctctgtgag
caattcaactccatggagcccaacaaacaaaagaatgtctctgaagaactggaccgaacc
ccacctgaggtgtccaagaagcttgaggacatccggactcgctacgccttctga
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