Phocoena phocoena (harbor porpoise): 136140398
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Entry
136140398 CDS
T11058
Symbol
PSMC4
Name
(RefSeq) 26S proteasome regulatory subunit 6B isoform X1
KO
K03063
26S proteasome regulatory subunit T3
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03050
Proteasome
pphc05010
Alzheimer disease
pphc05012
Parkinson disease
pphc05014
Amyotrophic lateral sclerosis
pphc05016
Huntington disease
pphc05017
Spinocerebellar ataxia
pphc05020
Prion disease
pphc05022
Pathways of neurodegeneration - multiple diseases
pphc05169
Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03050 Proteasome
136140398 (PSMC4)
09160 Human Diseases
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
136140398 (PSMC4)
09164 Neurodegenerative disease
05010 Alzheimer disease
136140398 (PSMC4)
05012 Parkinson disease
136140398 (PSMC4)
05014 Amyotrophic lateral sclerosis
136140398 (PSMC4)
05016 Huntington disease
136140398 (PSMC4)
05017 Spinocerebellar ataxia
136140398 (PSMC4)
05020 Prion disease
136140398 (PSMC4)
05022 Pathways of neurodegeneration - multiple diseases
136140398 (PSMC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pphc03051
]
136140398 (PSMC4)
Proteasome [BR:
pphc03051
]
Eukaryotic proteasome
Regulatory particles
PA700 (19S proteasome)
ATPase subunits
136140398 (PSMC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Prot_ATP_ID_OB_C
AAA_5
AAA_2
AAA_lid_3
AAA_16
RuvB_N
AAA_22
nSTAND3
DUF815
NPHP3_N
AAA_28
RNA_helicase
Mg_chelatase
AAA_14
TIP49
NTPase_1
ATPase_2
NACHT
AAA_3
IstB_IS21
AAA_7
TsaE
AAA_18
AAA_33
Parvo_NS1
AAA_lid_PRS2_C
AAA_17
AAA_25
NB-ARC
AAA_24
ABC_tran
DUF3450
Motif
Other DBs
NCBI-GeneID:
136140398
NCBI-ProteinID:
XP_065754559
LinkDB
All DBs
Position
20:complement(12469505..12478073)
Genome browser
AA seq
418 aa
AA seq
DB search
MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY
IKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTID
RELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREA
VELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL
GEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD
QNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDL
EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggaggagataggcatcctggtggagaaagctcaggatgagatcccagccctgtctgtg
tcacggccccagactggcctgtccttcctggggcctgagcctgaggacctggaggacctg
tacagccgctacaagaagctgcagcaagagctggagttcctggaggtgcaggaggagtac
atcaaggatgagcaaaagaacctgaagaaggaattcctccacgcccaggaggaggtgaag
cgaatccagagcatcccactggttattgggcagtttctggaggctgtggatcagaataca
gccatcgtgggctccaccacaggctccaactactacgtgcgcatcctgagcaccatcgac
cgggagctgctcaagcccaacgcctcggtggccctccacaagcacagcaacgccctggtg
gacgtgctgcctcctgaggccgacagcagcatcatgatgctgacctcagatcagaagcca
gacgtcatgtacgcggacatcgggggcatggacatccagaagcaggaggtgcgggaggcc
gtggagctcccccttacgcactttgagctctacaagcagatcggcatcgaccctccccga
ggcgtcctcatgtatggcccgcccggctgcgggaagaccatgttggcaaaggctgtggct
catcacacgacagctgcattcatccgagttgtgggctcagagtttgtacagaagtacctg
ggtgagggccctcgcatggtccgggacgtgttccgcctggccaaggagaacgcacctgcc
atcatcttcatagatgagattgatgccatcgcaaccaagagattcgatgcccagacaggg
gctgacagggaggttcagagaatcctgctggagctactgaatcaaatggatggattcgac
cagaacgtcaacgtcaaggtgatcatggccacaaacagagcagacaccctggatcctgct
ctgctgcggccgggacgccttgaccgtaaaattgaatttccactccctgaccgccgccag
aagagattgattttctccactatcaccagcaagatgaacctctctgaggaggttgacttg
gaagattacgtggcccgaccagataagatttcaggagctgatatcaactccatctgtcag
gagagcgggatgttggctgtccgagagaaccgctacattgttctggccaaggacttcgag
aaagcatacaagacagtcatcaagaaggacgaacaggagcatgagttttacaagtga
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