Phocoena phocoena (harbor porpoise): 136140426
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Entry
136140426 CDS
T11058
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03030
DNA replication
pphc03410
Base excision repair
pphc03420
Nucleotide excision repair
pphc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136140426 (LIG1)
03410 Base excision repair
136140426 (LIG1)
03420 Nucleotide excision repair
136140426 (LIG1)
03430 Mismatch repair
136140426 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphc03032
]
136140426 (LIG1)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136140426 (LIG1)
Enzymes [BR:
pphc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136140426 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
136140426 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
136140426 (LIG1)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
136140426 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
136140426 (LIG1)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
136140426 (LIG1)
NER (nucleotide excision repair)
Other NER factors
136140426 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
136140426 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
136140426
NCBI-ProteinID:
XP_065754603
LinkDB
All DBs
Position
20:7958639..7990425
Genome browser
AA seq
921 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEKEIPNSTRETESPPKVALKERNRVEPEGDSPVKRPGRKT
ARVLGSEGEDEEEEAPKPPKIQKRAPDSPPVSPPSPGTLPESSPSHSSTSPTVVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGTKKKRKEEEEEEEETPTESLTEPEGGNKKEAE
EGDQPRSPPEPLKTSKAKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRKP
AIKQEAKEEGPSALRKDETKGHLDPSSYNPAKNNYHPVDDACWKVGQRVPYLAVARTFEK
IEEVSARLRMVETLSNLLRSVAALSPADLLPVLYLCLNRLGPPQQGLELGIGDGILLKAV
AQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFRDIAQLAGSA
STAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPP
AVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGVERLPEHCRLSPGV
PLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRY
PDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLY
AFDLIYLNGESLVREPLSRRRQLLRQNFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDS
CEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGF
LLAAYDEESEELQAICKLGTGFSDEELEGHHQTLQALVLPTPRSYVRADGAVAPDHWLDP
SAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLYR
KQSQIQNQQGAEPDSDLEDFY
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagatacccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggaacctgagggcgactctccagtgaagaggccagggaggaagacg
gcccgggtcctgggcagcgaaggggaggacgaggaggaggaagcccccaagccccccaaa
atccagaagcgtgctccagattccccaccagtctcccctcccagtcctggcacactgcct
gagagcagcccttcccactctagcacctctcccacggtcgtctccccgtcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacggaggaaccaagaagaagaggaaggaggaggaggaggaggaa
gaagagacaccgacagaaagcctcacagagcctgaagggggcaacaagaaggaagcagaa
gaaggggaccagcccaggtcaccccctgagcccctgaagacctccaaagcaaagccccca
acagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggccag
gctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaagcca
gcaatcaaacaagaagcaaaagaagaggggcccagcgctctgagaaaggacgagaccaag
ggacacctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgacgat
gcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgagaag
atcgaagaggtttctgcgcggctccggatggtggagacactgagcaacctcctgcgctcc
gtggcggccctgtcacctgctgacctcctccctgtcctctacctctgcctcaaccgcctg
gggccgccccagcagggcctggagctcggcattggcgacggcatcctcctcaaggcggtg
gcccaggccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggcgac
gtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccgcccgcc
ctcaccgcctccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagcgct
tccacagccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactcagaa
gcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcagtca
gtgctggcggccctcgcccaggctgtgagcctcaccccgccaggtcaagaattcccccca
gccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggaggag
caaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggattgtcccc
gtgttgctggagcatggtgtggagcggctcccagagcactgcaggctgagcccaggggtc
cccctgaaaccaatgttggcccacccaacccggggcgtcagcgaggtcctgaggcgcttt
gaggaggcagctttcacctgcgagtacaaatacgatggacagagggcacagatccacgtt
ttggaaggcggggaggtgaagatcttcagcaggaatcaggaggacaataccggaaggtac
cccgatatcatcagccgcatccacaagattaaactcccatcagtcacatccttcatcctg
gacgcggaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctc
accacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctgtac
gccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccgacgc
cggcagctgctccggcagaacttcgtggagacggagggcgagtttgtctttgccacctct
ctagacaccaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagactcc
tgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaagagg
tcgcacaactggctcaagctgaagaaggactacctggacggcgtgggcgacaccctggac
ctcgtggtgatcggcgcctacctgggccggggaaagcgggccggccggtacgggggcttc
ctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcggaacg
ggcttcagcgacgaggagctagaggggcatcaccagaccctccaggccctggtgctgccc
accccacgctcctatgtccgggccgacggcgccgtggcccctgaccactggctggacccc
agcgccgtgtgggaggtgaagtgtgcagacctctccctctcccccatctacccggctgcc
cggggcctggtggatagcgagaagggaatctccctccgcttccctcggttcatctgcgtc
cgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtaccgg
aagcaaagtcagattcagaaccagcaaggcgcagagccagactccgacctggaagatttc
tactag
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