Phocoena phocoena (harbor porpoise): 136141016
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Entry
136141016 CDS
T11058
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
136141016 (SHANK1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
136141016
NCBI-ProteinID:
XP_065755227
LinkDB
All DBs
Position
20:6217612..6260621
Genome browser
AA seq
2163 aa
AA seq
DB search
MTHSPASSEDEERHSASECPEGGSESDSSPDGPGRGPRGTRGRGSGGPGSLASVRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGADKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGVGLTVPPALLRANSDTSMALPDWMVFAAPGTSSAGAPGPTSGPQGQPQPSAPSTK
LSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRI
GWFPSDCLEEVANRSQEAKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDYIIK
EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD
FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPPQAKRLPPP
TISLRSKSMTSELEEMEYEQQAAPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPG
PGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDERPY
LAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGVPFNPGSGV
PHPASSPSSFDGPCPPDSRVGSREKSLYHGGALPPAHHPPPPHQPHAPLPQPHHHHAHPP
HPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSATPGALSPSHHGSGGGGSGSSQAPA
LRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPTPSPTSPASPQPP
PAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPETAGGGGGGGGGGGGS
SAPSPAPAMSPVPPPPSPVPAPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRST
LFLSTDTGDEDGGESSLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSGGGYGGY
GAGSRAYGSSGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESAEGGGA
PQPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGAPPPDPARRELGYRAGLGSQEKSL
PASPPAARRSLLHRLPPTAPGVGPLLLQLGSEPPAPHPGVSKAWRSAAPEEPERLPLHVR
FLENCQPRAGGAGGRVPPSEDGPGIPPPSPRRSVPPSPTSPRGSDENGLPLLVLPPPAPS
VDVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPTAASPAPPAPPPAVAAA
PPTLDSTASSLTSYDSEVATLTQAGPAAAGDAPPPGPAAPAAPPPPAPQPGPDPPAGTDS
GIEEVDSRSSSDHPLETISSASTLSSLSAEGGAGGGVASVASGPELLDTYVAYLDGQAFG
GSGPPGPPYPPQLMTPSKLRGRALGASGGLRPGPGGGLRDPVTPTSPTVSVTGAGTDGLL
ALSGCSGPSTAGVAGGPGAVEPEGPPVPLPSASSLPRKLLPWEEGPGPPPPPLPGPLAQP
QASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGGGGSGDGHHGGASYVPERTSS
LQRQRLSEDAQPSLLSKPVSSLFQNWSKAPLPPLPTGGGGSASAAAAPGATSPSATSSST
PARHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPAGPLYPGLFDIRGS
PTGGAGGSADPFAPVFVPPHPGMSGGLGGALSGASRSLSPTRLLSLPPDKPFSAKPLGFW
TKFDVADWLEWLGLAEHRARFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFF
LER
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgtcaagcgaggacgaggaacgccacagtgccagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggcccgggagaggcccccgggggacc
cggggccggggcagcgggggacctggtagcctggcctcggttcgaggcctccagggccgc
tccatgtctgtcccagacgacgcccacttcagcatgatggtctttaggattggcatccct
gacctgcaccagacaaaatgcctgcgcttcaacccagatgccaccatctggacggccaag
cagcaggtgctctgtgccctgagcgagagcctgcaggatgtcctcaactatggcctgttc
cagccggccacgtcgggccgcgatgccaacttcctggaggaggaacggctgctgcgggag
tacccccagtcctttgagaagggggtgccctacctggagttccgatacaagacccgagtt
tacaaacagaccaacctggatgagaagcagctggccaagttgcacacgaagacggggttg
aagaagttcctggagtacgtacagctcgggacatccgataaggtggcacggctgctggac
aaggggctggaccccaattatcatgactcggattcaggagagacccccctgacgctggct
gcccagacagaaggctctgtagaggtgattcgaaccctgtgcctgggcggggcccacatc
gacttccgggcccgggatggcatgacagcgctacacaaggccgcgtgtgcccgtcactgc
ctcgctctcacggcgctcctggatcttgggggttcccccaactacaaggaccgccggggg
ctgactcctctgttccatacggctatggtggggggcgacccccgctgctgtgagctactc
ctgtacaacagggcccagctgggcatagctgatgagaacggctggcaggagatccaccag
gcctgccagaggggccattctcagcacctggaacacctgctcttctatggggctgagcct
ggagcccagaacgcctcggggaacacggccctgcacatctgcgccctctacaataaggag
acgtgtgctaggatactcctctaccgaggagctgacaaggatgtgaagaataacagcggc
cagacccccttccaggtggcagtgattgctgggaattttgaacttggggagctgatccga
aaccatcgagaacaggacgtggtgcccttccaggagtcccccaagtacgcagcccggcga
cggggaccccccggcgtggggctgacggtgccccccgcgctgctgcgggccaacagcgat
accagcatggccctgcctgactggatggtgttcgccgccccggggacctcgtccgccggg
gcccccggccctacctcagggccccagggccagccgcagccctcggcccccagcaccaag
ctcagcagtgggaccctccgaagtgccagcagcccccggggcgcccgggcccgctcacca
tcccgagggaggcaccccgaggaggccaagaggcagccccgtggacggcccagctccagc
gggacaccccgggaagggccagctgggggcaccgggggctccgggggccccgggggctcc
ctgggcagccgcgggagacgccggaagctctactcagcggtccccggacgttccttcatg
gctgtgaagtcctaccaggcccaagccgagggggagatctccctaagcaagggcgagaag
atcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgcatc
ggctggttcccctctgactgcctggaagaggtggccaaccgctcccaggaggcaaagcaa
gaaagccgaagtgacaaggcaaagagactattccggcattataccgtgggctcctacgac
agctttgatgccccaagcttgatggatgggattggcccagggagtgattacatcatcaag
gagaagacagttctgctgcagaagaaggacagtgaggggtttgggttcgtgctccggggg
gccaaggcgcagacccccatcgaggagttcacccccaccccggccttcccggcgctgcag
tatctggagtcggtggacgagggcggcgtggcgtggcgagcgggactgcgaatgggagac
ttcctcattgaggtgaacgggcagaacgtggtgaaggtcggccaccgacaggtggtgaac
atgatccgccaagggggtaacacgctgatggtcaaggtggtgatggtcacccggcacccg
gacatggatgaggctgttcataagaaagcaccgccgcaggctaagcggctcccgcctcca
accatctccctgcgttccaagtctatgacctcagagctggaggagatggagtacgagcag
caagctgcgccggtgcccagcatggagaaaaagcggaccgtgtatcagatggctctcaac
aaactggatgaaattttggcggcagctcagcagaccatcagtgcaagtgagagtcctggg
cctggtggcctcgcgtccctgggcaaacaccgacccaaaggcttctttgccactgagtcg
agctttgatccccaccaccgctcccagccaagttatgaacgtccttcctacctgcctcca
ggacctgggcttatgctccggcaaaagtctattggggctgcagaagatgagagaccctac
ctagcacccccagccatgaagttcagccgcagcctgtctgtgcctggttcggaggacatc
ccgccgccgcccaccacgtccccaccagagcctccctacagcacacctccagccccctct
tcctccggccgcctcactccctctccccggggagtgcccttcaaccccggctcaggtgtc
ccccaccccgcctcgtcaccgtcgtccttcgatgggccctgccctcctgacagccgtgta
gggagccgtgagaagagcttgtaccacggcggggccctgccccctgcgcaccacccgcca
cccccacaccagccgcacgctccgctcccccagccacaccaccaccacgcccacccgccg
catcccccggagatggagacaggcggctcccccgatgaccccccaccgcgactggctctg
gggccccagcccagcctgcgaggttggcggggcggcgggcccagcgcgaccccgggggcc
ctgtccccgtcgcaccacggcagcgggggcgggggtagcggttcctcccaggccccggcc
ctgcgctacttccagctgcctccccgggcggccagcgcggccatgtacgtgccggcccgt
tcgggccgcgggcgcaagggcccgctcgtcaagcagaccaaagtcgaaggcgagccccag
aagggcggcggcctcccgcccacgccctcgcccacgtctccggcgtccccgcagccgccg
ccggccgcggccgccccgtcggaaaagaactccatccccatccccaccatcatcatcaag
gctccatccaccagtagcagcggccgcagcagccagggcagcagcaccgaggcggagccc
ccgacccagcccgagaccgcgggcggcggcggagggggcggcggcggcggcggcggctcc
tccgcgccgagccccgccccggccatgtcgccagtgccgccgcccccctcgcccgtgccc
gcccccgcctcgcccagcggcccggccaccctcgatttcaccagccagttcggagcggcc
ctggtaggggcggctcggagagaagggggctggcagaacgaagcccgccggcggtctacg
ctcttcctctccaccgacacgggggacgaggacggcggcgagagctcgctgggcccgggg
gcgcccccgggcccccggctgcgccactccaaatccatcgacgaaggcatgttttcggcc
gagccctacctccggctggagtccgcaggcgccgggagcggcggcggctacgggggctac
ggagccggcagccgagcctatgggagcagcggaggcagcagcgccttcaccagcttcctg
ccgccgcgccccctggtccacccgctgaccggcaaggccctggacccagcctccccgctc
gggctggccctggccgcccgagagcgggcgctgaaggagtccgcggagggcggtggggcc
ccccagccccctccgaggcccccgtcgccccgctacgaggctccgccgcccacgccgcac
caccactcgccccacgcccaccacgagccggtgctgcgtctctggggagcccccccgccg
gacccggcgcgccgggagctgggctaccgggccgggctgggcagccaggagaagtccctt
ccggccagcccgccagctgcccgacgctccctgctgcaccgcctgccgcccaccgccccc
ggggtcgggcccctcctgctgcagctggggtccgagcccccggccccgcaccccggggtg
agcaaagcctggaggtccgcagccccggaggagcccgagcggctgcccctccacgtgcgg
ttcctcgagaactgccagccccgggccggtggggcggggggcagggtgcccccctcggag
gacgggccggggatcccgccgcccagccctcgccggtccgtgcccccctcgccgacctcc
ccgcggggcagtgacgagaacgggctccccctgctggtcctgccgccccccgccccctcg
gtggacgtggaagacggcgaatttctctttgtggaaccgctgcccccgcccctggagttc
tccaacagctttgagaagcccgagtcgcccctcacgccggggccgccccacccgctgccg
gacccacccaccgcggccagcccagcgccccctgcgccgccccctgccgtggccgccgcc
cctcccacgctggactccaccgcatccagcctgacttcctatgacagcgaggtggccacg
ctgacccaggcgggccccgcagctgctggggacgcgcctccgccgggcccagcagcccca
gccgccccgcctccgcctgccccacagcctggcccagaccctccagctggcacagattcc
ggtatcgaggaggtggacagtcggagcagcagtgaccacccgctggagaccattagcagc
gcgtccacgctgagcagcctgtctgccgaaggcggggctggcggcggggtggccagtgtg
gccagtgggccggagcttctggacacgtatgtggcctacctggacggccaggccttcggg
ggcagcggtcctcctggcccaccatacccgccgcagctcatgactccctctaagctccgg
ggccgggcgcttggggccagcggaggcctgcggcctggccccggtgggggactccgagac
cctgtcactcccaccagccccaccgtctcggtgacgggggctggaaccgatgggctgctg
gccctgagtggttgctcaggaccttcaacggcaggtgtggccggcggtccaggggctgta
gagccagaaggcccaccggtgcccttgccatccgcctcctccctgcctcggaagctgctg
ccctgggaagagggcccgggtccaccaccaccccccctgcctgggcccttagcccagcct
caggcctcagccttggccacagtaaaagccagcatcatcagtgaactcagctccaagctt
cagcagtttgggggctcctcggcagctggtggcgctctgccctgggcccggggaggcggc
gggggaagcggggacggccaccacgggggagccagctacgtcccagagaggacttcctcc
ctgcagcggcagagactctcggaagacgcccagccctcgcttctctccaaacctgtcagc
agcctgtttcagaactggtccaaagcgcctctgccgcccctccccacaggaggcgggggc
tccgcttcggccgctgcggccccgggggccacctcgccgtcagccacctcctcctccacg
cccgcccgccacctccagggcgtggagttcgagatgcggccacctttgctccgccgggcc
ccgagcccgtccctgctgcccgcctcggagcacaaggtcagccccgcgccccggccctcc
tccctacccatcctgcctgctggaccgctctacccgggcctctttgacatccgcggctcc
cccaccggaggggcaggaggctcggctgaccccttcgcccctgtctttgtgccaccgcac
cccgggatgtccgggggtctcggtggggccttgtcaggggcctcgcgctccctctcaccg
acccgcctgctctccctgcccccggacaagcccttcagcgctaaacctctggggttctgg
accaagttcgacgtggctgattggcttgagtggctgggcttggctgagcaccgagcccga
ttcctggaccacgagatcgatggctcccacctgcccgccttgaccaaggaggactacgtc
gatctgggggtgaccagggtgggccaccgcatgaacatcgaccgggctctcaaatttttc
ctggagaggtga
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