Phocoena phocoena (harbor porpoise): 136141442
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Entry
136141442 CDS
T11058
Symbol
ERCC2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03022
Basal transcription factors
pphc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136141442 (ERCC2)
09124 Replication and repair
03420 Nucleotide excision repair
136141442 (ERCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136141442 (ERCC2)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136141442 (ERCC2)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136141442 (ERCC2)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136141442 (ERCC2)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136141442 (ERCC2)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
136141442 (ERCC2)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136141442 (ERCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_22
SesA
SNF2-rel_dom
TcaA_5th
Motif
Other DBs
NCBI-GeneID:
136141442
NCBI-ProteinID:
XP_065755694
LinkDB
All DBs
Position
20:9709524..9727737
Genome browser
AA seq
736 aa
AA seq
DB search
MLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI
EELRKLLNFYEKQEGEKLSFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYIRA
QYQRDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKAMGQRQGWCPYFLARYSILHANV
VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE
TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAQLANPVLPDEVLKEAVPGSIR
TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH
TLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAI
KPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAI
SSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRN
KLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVP
YVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRF
ARADKRGKLPRWIQEHLTDASLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL
ESEETLRRIAQIAQQL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgctggagctcaaacgcacgctggatgccaagggtcatggagtcctggagatgccctca
ggcactgggaagacagtgtccctgttggccctgatcatggcgtaccagcgggcatatcca
ctggaggtgactaaactcatctactgttcgaggactgtgcctgagattgagaaggtgatt
gaagagcttcgaaagttactcaacttctatgagaaacaggagggcgagaagctgtcgttt
ttggggctggctctgagctcccgaaagaacctgtgtattcatcccgaggtgacgcccctg
cgctttgggaaggacgtcgatggaaaatgccacagcctcacggcctcctacataagggca
cagtaccagcgggaccccagcctgccccactgccgcttctacgaggaatttgatgtccat
gggcgccaggtgcccctccctgctggcatctacaacctggacgacctgaaggccatgggg
cagcgccagggctggtgcccatacttccttgcccgatactcaatcctgcacgccaacgtg
gtggtctacagctaccactacctcctggaccccaagattgccgacctggtgtccaaggag
ctggcccgcaaggccgtcgtcgtcttcgacgaggcccacaacattgacaatgtctgcatc
gactccatgagtgttaacctcacccgccggaccctggatcggtgccagggcaacctggag
accctgcagaagacggtgctcaggatcaaggagacggacgagcagcgtctgcgggacgag
taccggcgcctggtggaggggctgcgggaggccagcgccgcccgggagaccgacgcccaa
ctggccaaccccgtgctgcccgacgaggtgctgaaggaggcggtgccaggctccatccgc
acggccgagcacttcctgggcttcctgcggcggctgctggagtacgtcaagtggcggctg
cgcgtgcaacacgtggtgcaggagagcccacccgccttcctgagcggcctggcccagcgc
gtgtgcatccagcgcaagcccctcaggttctgcgccgagcgcctccgctccctcctgcac
accttggagatcacggatctcgccgacttctcccctctcaccctcctggctaacttcgcc
acgctcgtcagcacctacgccaagggtttcaccatcatcattgagccctttgacgacagg
accccaaccatcgccaaccccatcctgcacttcagctgcatggacgcctcgctggctatc
aaacctgtgttcgagcgcttccagtccgtcatcatcacatctgggacgctgtccccgctg
gacatctaccccaagatcctggacttccatcccgtcaccatggcaaccttcaccatgaca
ttggctcgggtctgcctctgccccatgatcattggccgtggcaatgaccaggtggccatc
agctccaagtttgagacccgggaagatatcgcggtgatccggaactacggaaacctcctg
ctggagatgtccgctgtggtgcccgatggcatcgtggccttctttaccagctaccagtac
atggagagcaccgtggcctcctggtacgagcagggcatcctcgagaacatccaaaggaac
aagctgctctttattgagacccaagatggggctgagaccagtgttgccctggagaagtac
caggaggcctgcgagaacggccgtggggccatcctgctctcggtggcccgaggcaaagtg
tctgagggaattgactttgtgcaccactacggccgggccgtcatcatgttcggggtgccc
tacgtctacacccagagccgtattctcaaggcgcggctggaataccttcgggaccagttc
cagattcgagagaacgactttctgaccttcgatgccatgcgccacgcggcccagtgcgtg
ggtcgggccatcaggggcaagactgactacggcctcatggtctttgccgacaagcgcttt
gcccgggccgacaagcgggggaaactgccccgctggatccaggagcacctcaccgacgcc
agcctcaacctgaccgttgacgagggggtccaggtcgccaagtacttcctgaggcagatg
gcacagccattccaccgggaggaccagctgggcctgtccctgctcagcctggagcagctg
gagtcggaggagacgctgcggaggatagcgcagatcgctcagcagctgtag
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