Phocoena phocoena (harbor porpoise): 136141479
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Entry
136141479 CDS
T11058
Symbol
TSEN34
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34 isoform X1
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pphc03016
]
136141479 (TSEN34)
Enzymes [BR:
pphc01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
136141479 (TSEN34)
Transfer RNA biogenesis [BR:
pphc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
136141479 (TSEN34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
TSEN34_N
Motif
Other DBs
NCBI-GeneID:
136141479
NCBI-ProteinID:
XP_065755731
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All DBs
Position
20:complement(3904856..3909426)
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AA seq
312 aa
AA seq
DB search
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ
AAKKQKLEQKSGTSGSQEAGGNQAAEENEASAGQAAGEHEEAGEGSSSPQPGPSNGVAPL
PRSALLIQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAG
KFGGDFLVYPGDPLRFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVRKTLLLCSPQPDGK
VVYTSLQWASLQ
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgctggtggtggaggtggcgaacggccgctccctggtgtggggggccgaggcggtgcag
gcgctgcgggagcgcctgggagtagggggccgcacggtcggcgccctgccccgcggaccc
cgccagaactcgcgcttgggcctcccgctgctgctgatgcccgaagaggcgcggctgctg
gcagagatcggcgcggtgaccctagtcagcgccccgcgcccggatccccgccagcacagc
ctggcattggcatccttcaagcgccagcaagaacagggcttccaggagcaaagtgctctg
gcagctgaggcccgtgagacccgtcgtcaggagctcctagagaagattgcagagggccag
gctgcgaagaagcagaagctggaacagaaatcagggaccagcgggagccaggaggccggt
gggaaccaagctgcagaagagaatgaggccagtgctggccaggctgctggagagcatgag
gaagcaggtgaaggctcctcctctccccagccagggccttcaaatggggtggctcctttg
cccaggtcggctctgctcatccagctggccactgctaggcctcggcccatcaaggctagg
cccctggactggcgtgtccagtccaaagactggccccacgctggccgtcctgcccacgag
cttcgctacagcatctacagagacctgtgggagcgaggcttcttcctcagtgcggctggc
aagttcgggggcgacttcctggtctatcccggcgacccgctccgtttccatgctcactac
atcgctcagtgctgggctcccggggaccccatcccactccaggacctggtttctgctggc
cgcctcggcaccagtgtcagaaagacactgctgctttgctctccgcagcctgatggtaag
gtggtctacacatccctgcagtgggccagcctgcagtga
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