Phocoena phocoena (harbor porpoise): 136142223
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Entry
136142223 CDS
T11058
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04151
PI3K-Akt signaling pathway
pphc04382
Cornified envelope formation
pphc04510
Focal adhesion
pphc04512
ECM-receptor interaction
pphc04518
Integrin signaling
pphc04820
Cytoskeleton in muscle cells
pphc04926
Relaxin signaling pathway
pphc04933
AGE-RAGE signaling pathway in diabetic complications
pphc04974
Protein digestion and absorption
pphc05146
Amoebiasis
pphc05165
Human papillomavirus infection
pphc05200
Pathways in cancer
pphc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
136142223 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136142223 (COL4A6)
04518 Integrin signaling
136142223 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
136142223 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
136142223 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
136142223 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
136142223 (COL4A6)
09158 Development and regeneration
04382 Cornified envelope formation
136142223 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
136142223 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
136142223 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
136142223 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
136142223 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
136142223 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pphc04147
]
136142223 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
pphc00536
]
136142223 (COL4A6)
Exosome [BR:
pphc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
136142223 (COL4A6)
Glycosaminoglycan binding proteins [BR:
pphc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136142223 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
136142223
NCBI-ProteinID:
XP_065756314
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All DBs
Position
X:complement(91507730..91591389)
Genome browser
AA seq
1710 aa
AA seq
DB search
MLGWAVFGQLLDGTEYEVVCWGLITHSGAMRIAGCSAGVLGTAVKDKLTGWSTGRPGPIG
IQGPVGPQGFPGPSGLSGLKGERGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPG
PRGPPGLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGEPILAQGSFKGMKGEPGL
PGLDGITGPQGAPGSPGAVGPIGPPGLQGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLP
GPAGPPPSTGELEFMGFPKGKKGSKGEPGLQGFPGISGPPGLPGFGIAGEKGEKGIPGLP
GPRGPTGLEGVQGPPGSQGKKGSSGFPGLNGFPGIKGEKGDIGLPGPDVFIDTDGAVISG
YPGDTGMPGLPGLKGDEGIQGLPGPPGAPGLPALPGGPGTLGLQGVPGLKGDQGNPGHTT
IGAAGLPGRDGLPGLPGLPGLPGPAFETGTLQSTEPGLPGLRGERGPKGNPGLKGIKGDS
GFCACDGGVPNIGPPGEPGLPGPPGLLGLPGLKGARGDPGFGGAQGPSGDPGVFGPRGLE
GPKGKKGEATLSTVSGMPGDQGDPGLQGLPGETGAPGKDGVPGLPGLPGFQGDGGQGFPG
EKGLPGLPGEKGRAGPTGPPGIGLPGSSGPRGLPGDKGVDGFPGQPGPPGIPGDCCCREK
VGQGDLDTEGGITLPCIIPGPYGPSGFPGAPGFPGPNGARGLPGTPGQPGLHGNKGEPGS
PGLVHLPEMPGFPGPRGEKGLPGFPGLPGKDGLPGKVGSPGLPGPKGAPGDIIGAENGAP
GKQGLQGLPGDRGFPGDSGLTGPKGLLGKSGLLGPKGDRGSPGIPGRAGQPGPRGSDGLF
GIKGKPGLPGAPGFPGTSGHPGKKGPRGDIGPPASAGKRGLPGLKGLPGSPGLIGFLGNS
GLPGATGLPGLPGLKGEKGSVGLIGFPGIPGLPGIPGASGLKGIPGSMGRVGPSGQAGSP
GEKGDRGDPGPVGVPSPRLPVLNLHFTGDKGSQGSPGSIGFPGPRGDKGEAGSPGPPGLP
GAPGFPSLIKGLSGRPGSPGSTGLRGLPGPKGSPGITGFPGIPGESGSQGLSGAPGLPGA
SGLPGLKGDQGQTLGISGSPGPKGQPGEPGFKGVKGKDGPVGDVGFPGNKGEDGKVGISG
DVGLPASPGLPGVAGMRGNPGLPGSSGHPGAAGPLGPPGLIGTKGFPGLSGLHGLNGLPG
TKGTHGTPGPSITGVPGPAGLPGPKGEKGSLGIGIGVPGKPGVRGPKGSRGFPGLQGPAG
LPGAPGLSLPSVIAGQPGDPGRPGLDGEQGRPGPPGLPGPPGPSSDQGDPGDPGFPGIPG
PQGPKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGLSG
PRGAPGQTPIAEAIEAPPGPMGLTGIDGIPGLMGDPGAQGPGGLQGFKGLPGIPGKDGPN
GLPGPPGALGDPGLPGLQGPPGFEGAPGKPGPFGRAGMPGQSVRVGYTLVKHSQSEQVPL
CPVGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDK
SYWLSTTAPIPMMPVGQTQIPPYISRCSVCEAPSQAIAVHSQDITIPQCPMGWRSLWIGY
SFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERE
QFGEEPVSETLKAGQLHTRVSRCQVCMKSV
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgcttggctgggcggtcttcggacaattgctggatggtacagagtacgaggtggtctgc
tggggtctgatcactcactcaggtgccatgcgcattgctggttgcagtgctggggttctg
ggaaccgccgtcaaagataagctgacaggttggtcaaccgggcgaccaggaccaattgga
attcaaggtccagtgggtcctcaaggatttcctggccctagtggtttatcagggttgaaa
ggagagaggggctccccaggacctctgggaccgtatggaccaaaaggagataagggtccc
atgggagttcctggctttcttggcatcaatgggattccgggccaccctggacagccagga
cccagaggcccacctggcctggatggctgtaatggaactcaaggagctgttggatttcca
ggccctgatggctatcccgggcttctcggaccacccgggcttcctggtcagaaaggctct
aaaggtgaacctatccttgcccaaggtagtttcaaaggaatgaagggggagcctgggctg
cccggactggatggaatcactggcccacaaggagcacccggatctccaggagctgtggga
cccataggaccaccaggattgcaaggtcctccaggcccccctggtttccctggtcctgat
gggaatatggggttaggtttccaaggagagaaaggagtcaagggggatgttggcctgcct
ggccctgcaggacccccaccatctactggggaactggaattcatgggattccccaaaggg
aagaaaggatccaagggtgaaccagggcttcagggcttcccaggaataagtggtcctcca
ggtctcccgggttttggaattgctggagaaaaaggagaaaagggaatccctggtttgccg
ggacctaggggtcccacgggtttagaaggagtccaaggccctccagggagtcagggcaag
aaggggtcttcaggtttccccgggcttaatggattcccaggaattaagggtgaaaagggt
gacattggcctgccaggcccagatgttttcatcgatacagatggtgctgtgatctcaggt
tatcctggagacaccggtatgccaggcctcccaggccttaaaggagatgaaggcatccag
ggcctgcctggccctcctggtgcccctggattaccagctttaccaggtggccccggtact
ctagggctccagggagttccaggcctgaagggggaccaaggaaaccccggccacaccaca
attggggcagctggcctccctggcagagatggtttgccaggcctaccaggcctaccaggc
ctacctggtccagcatttgagacgggaactctacagagcacagagccagggttgcctggt
ctccgaggagaacgaggtccaaaaggaaacccaggcctcaaaggaatcaaaggggactct
ggtttttgtgcttgtgatggtggtgtcccaaacattggaccacctggggagccaggccta
cctgggccaccaggtctcctgggccttccgggcctgaaaggagcgagaggagatccaggc
tttgggggtgcacagggcccatcaggagatccaggtgtatttgggcctcgaggtctggaa
ggccccaaaggaaagaaaggggaagcgactctcagtacagtatcagggatgccaggagat
cagggtgatcctggtctccaggggctccctggtgagacaggagccccaggcaaggacgga
gtaccaggtttaccaggcctgccaggctttcagggtgatggtggacagggcttcccaggt
gaaaaggggttaccaggacttcctggtgaaaaaggccgcgctggtccaactggcccccca
ggaattgggctaccaggatcttctggacctcgtgggcttcctggagataaaggagtagat
ggattcccagggcaaccaggcccccctgggattccaggtgactgctgctgcagggagaag
gttgggcaaggagacttagacacagagggaggtatcaccttgccttgtattattcctggg
ccatacggtccatcaggattcccaggagctcccggattcccaggccctaacggggcccgt
ggcctccctgggactccaggccagcctggattgcatggaaataaaggggagcccggaagt
ccaggattggttcacctccctgaaatgccaggatttcctggacctcgtggagagaagggc
ttgcctgggtttcctgggctccctggaaaagatggcttgcctgggaaagttggcagtccc
ggcttaccaggtcccaagggagcccctggtgacatcattggtgctgaaaatggtgctcct
gggaagcaaggcctacagggactgccaggagacagaggatttcctggagactctggcctt
acaggacccaagggtttgcttgggaagtcaggcttgctgggtcccaaaggtgatcggggc
agccctggaataccaggccgcgcaggacagccaggcccccggggatctgatggtctattc
ggcatcaagggcaaacccgggctcccaggagcaccaggctttccaggcacttcaggacat
cctggaaagaaaggtccaagaggcgatataggtccccctgcatcagctggaaagagaggc
ctgcctgggctgaaaggccttccgggatctccagggctaattggcttcctggggaactcc
ggcttgccaggggccactggactgccaggcctgccaggtctgaagggtgagaaggggtct
gttggactgataggttttccagggattccaggtctccctggtattcctggtgcaagtgga
ttaaagggaattcctgggtcgatgggaagagttggaccatctggacaggctggtagccct
ggtgaaaaaggagacagaggcgacccggggccagtcggagtacccagccccagacttcca
gtgctgaacctgcacttcacaggagacaaaggctctcagggctcacctggatccatcgga
tttcctgggcccagaggtgacaaaggagaggctggcagccctgggccaccaggcttgcct
ggagctcctggcttccccagcctcatcaagggacttagtgggagaccaggctcccctggc
tccacaggactacggggcttacccggcccgaaggggtcccctggaatcacaggtttccca
ggaataccaggagaaagtggttcacagggtctcagtggagctcctgggctcccaggagca
tctggtctcccaggtttaaaaggagatcaaggccagacacttggaatttctggtagccca
ggacccaagggacaacctggggagcctggtttcaaaggtgtgaaaggaaaagatggacca
gttggtgatgtgggtttcccaggaaacaaaggtgaagatgggaaagttggtatttctgga
gatgttggccttcctgcctccccaggactccccggggttgcaggcatgagaggaaatcca
gggcttccaggttcttcaggccacccaggggcagctgggcccctgggaccccctggccta
ataggaaccaaaggtttccctggactttctggtttacatggactgaatgggctgccagga
accaagggaacccatggaactccaggacctagtataaccggtgtgcctgggccagctggc
ctgcctggtcccaaaggagaaaaaggttctctaggaattggcattggagtcccaggaaag
ccaggcgtgagaggaccaaaaggtagcaggggtttcccaggtctccagggccccgctggt
ctccctggtgccccaggtctctccttgccctcagtcatagcaggacaacctggtgacccc
gggcgaccaggcctagatggagaacaaggccgcccaggccccccggggctcccaggaccc
cctgggccatcctcggatcaaggcgacccgggagaccctggcttccctggaattcctggc
cctcaagggcccaagggagaccaaggaattccaggtttctctggcctccctggagagcta
ggactgaaaggcatgagaggtgagcctggcttcatggggactccaggcaaagttgggcca
cctggagacccaggacttccggggatgaaggggaaggcagggccaagaggcttatccggc
ccccgaggcgctcctggacaaacaccaattgcagaagccatcgaggctcctcctggaccc
atgggtctaacaggcatcgatggcatccctggcctcatgggggaccctggggcccaaggc
cctggaggcctacaaggcttcaaaggtttacctggcatccccggcaaagacggccccaat
ggactccctggcccacctggggctcttggtgatcctggtctccctggactgcaaggccct
ccaggatttgaaggagctccagggaagccggggcccttcgggagggctggaatgcctggg
cagagcgtgagggtgggctacaccttggtgaagcacagccagtcagaacaggtgcccctg
tgccccgtcgggatgagccagctgtgggtcggttatagcctgctgttcgtggaggggcag
gagaaagcccacaaccaggacctggggtttgctggctcctgcctgccccgcttcagcacc
atgcccttcatctactgcaacatcaacgaagtgtgccactatgcccggcgcaacgataaa
tcctactggctctccaccaccgcgcccatccccatgatgcccgtcggccagacgcagatt
cccccgtacatcagccgctgctctgtgtgtgaggcgccctcacaagccatcgctgtgcac
agccaggacatcaccatcccgcagtgccccatgggctggcgcagcctctggattgggtac
tccttcctcatgcacacggccgccggcgctgagggcgggggccagtccctggtctcccct
ggctcctgcctagaggatttccgagccactcctttcatcgagtgcagtggtgcccggggc
acctgccactactttgccaacaagtacagtttctggctgacgacggtggaagagagggag
cagtttggggaggagcctgtatctgagacgctgaaagccgggcagctccacacccgggtc
agccgctgccaggtgtgtatgaaaagcgtgtag
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integrated database retrieval system
